chordc1a cysteine and histidine-rich domain (CHORD) containing 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: chordc1aprovided by ZNC
Official Full Name: cysteine and histidine-rich domain (CHORD) containing 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050626-79
See related: Ensembl:ENSDARG00000003973 AllianceGenome:ZFIN:ZDB-GENE-050626-79
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:114108
Summary: Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication. Orthologous to human CHORDC1 (cysteine and histidine rich domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 15

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (43961827..43977980, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (43938384..43954537, complement)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fd05e10.y1 (e-PCR)
- UniSTS:194963

fk34h12.y1 (e-PCR)
- UniSTS:200878

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in centrosome duplication	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: cysteine and histidine-rich domain-containing protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025175.1 → NP_001020346.1 cysteine and histidine-rich domain-containing protein 1a

See identical proteins and their annotated locations for NP_001020346.1

Status: PROVISIONAL

Source sequence(s)

BC097168

UniProtKB/TrEMBL

A0A8M1N6Z6, F1QHZ7, Q4QRD9

Related

ENSDARP00000041248.6, ENSDART00000041249.9

Conserved Domains (2) summary

cd06488
Location:231 → 317

p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...

pfam04968
Location:3 → 64

CHORD; CHORD