zpd zona pellucida glycoprotein d [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zpdprovided by ZNC
Official Full Name: zona pellucida glycoprotein dprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5618
See related: Ensembl:ENSDARG00000051959 AllianceGenome:ZFIN:ZDB-GENE-030131-5618
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi06d01; zgc:66449; wu:fi06d01
Summary: Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (17581397..17587787, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (17484997..17491418, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zona pellucida glycoprotein d

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199801.1 → NP_956095.1 zona pellucida glycoprotein d

See identical proteins and their annotated locations for NP_956095.1

Status: PROVISIONAL

Source sequence(s)

BC055661

UniProtKB/TrEMBL

Q7SXC5

Related

ENSDARP00000068169.4, ENSDART00000073679.6

Conserved Domains (2) summary

smart00241
Location:4 → 264

ZP; Zona pellucida (ZP) domain

pfam00100
Location:138 → 264

Zona_pellucida; Zona pellucida-like domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

17581397..17587787 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005162998.5 → XP_005163055.1 zona pellucida glycoprotein d isoform X1

UniProtKB/TrEMBL

A0A8M2BA45

Conserved Domains (2) summary

smart00241
Location:30 → 290

ZP; Zona pellucida (ZP) domain

pfam00100
Location:164 → 290

Zona_pellucida; Zona pellucida-like domain