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    stum stum, mechanosensory transduction mediator homolog [ Danio rerio (zebrafish) ]

    Gene ID: 562918, updated on 9-Dec-2024

    Summary

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    Official Symbol
    stumprovided by ZNC
    Official Full Name
    stum, mechanosensory transduction mediator homologprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041014-164
    See related
    Ensembl:ENSDARG00000041915 AllianceGenome:ZFIN:ZDB-GENE-041014-164
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fq26c01; si:dkeyp-59a8.4
    Summary
    Predicted to be located in membrane. Is expressed in nervous system. Orthologous to human STUM (stum, mechanosensory transduction mediator homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See stum in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (38322444..38359333)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (38419540..38456715)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene chemokine (C-C motif) ligand 38, duplicate 3 Neighboring gene chemokine (C-C motif) ligand 38, duplicate 4 Neighboring gene C-C motif chemokine 2-like Neighboring gene inositol-trisphosphate 3-kinase B Neighboring gene coenzyme Q8A, genome duplicate a Neighboring gene si:ch211-245h14.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Label-free quantitative analysis of the membrane proteome of Bace1 protease knock-out zebrafish brains. Hogl S, et al. Proteomics, 2013 May. PMID 23457027
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein stum homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030171.1 → NP_001025342.1  protein stum homolog

      See identical proteins and their annotated locations for NP_001025342.1

      Status: PROVISIONAL

      Source sequence(s)
      BX957287
      UniProtKB/Swiss-Prot
      Q5TYP8
      UniProtKB/TrEMBL
      A0A8M2B7P8
      Conserved Domains (1) summary
      pfam15795
      Location:33 → 116
      Spec3; Ectodermal ciliogenesis protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      38322444..38359333
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215507.1 → XP_068071608.1  protein stum homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M2B7P8
      Related
      ENSDARP00000113643.3, ENSDART00000132241.5

    2. XM_068215508.1 → XP_068071609.1  protein stum homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M2B7P8
      Related
      ENSDARP00000123709.1, ENSDART00000148936.3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5TYP8.1 GenPept UniProtKB/Swiss-Prot:Q5TYP8

    Gene LinkOut

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