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    rfxap regulatory factor X-associated protein [ Danio rerio (zebrafish) ]

    Gene ID: 100006212, updated on 4-Jan-2025

    Summary

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    Official Symbol
    rfxapprovided by ZNC
    Official Full Name
    regulatory factor X-associated proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-321
    See related
    Ensembl:ENSDARG00000076891 AllianceGenome:ZFIN:ZDB-GENE-091204-321
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-170h2.4
    Summary
    Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human RFXAP (regulatory factor X associated protein). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See rfxap in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (34958599..34961757)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (35014739..35017897)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene cyclin A1 Neighboring gene uncharacterized LOC103911767 Neighboring gene serine rich and transmembrane domain containing 1 Neighboring gene SMAD family member 9 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene exosome component 8 Neighboring gene SPT20 homolog, SAGA complex component

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    regulatory factor X-associated protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326367.1 → NP_001313296.1  regulatory factor X-associated protein

      Status: PROVISIONAL

      Source sequence(s)
      EH437372, EH488244
      UniProtKB/TrEMBL
      A0A8M1P8W7, E9QDE2
      Related
      ENSDARP00000114074.1, ENSDART00000140439.2
      Conserved Domains (1) summary
      pfam15289
      Location:76 → 187
      RFXA_RFXANK_bdg; Regulatory factor X-associated C-terminal binding domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      34958599..34961757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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