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    zdbf2 zinc finger, DBF-type containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 563160, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zdbf2provided by ZNC
    Official Full Name
    zinc finger, DBF-type containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101101-1
    See related
    Ensembl:ENSDARG00000044521 AllianceGenome:ZFIN:ZDB-GENE-101101-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    adam23a
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZDBF2 (zinc finger DBF-type containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zdbf2 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (13189563..13200604, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (12956028..12967050, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene caspase 20, apoptosis-related cysteine peptidase Neighboring gene dystrotelin Neighboring gene ADAM metallopeptidase domain 23a Neighboring gene eukaryotic translation elongation factor 1 beta 2 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The evolution of the vertebrate metzincins; insights from Ciona intestinalis and Danio rerio. Huxley-Jones J, et al. BMC Evol Biol, 2007 Apr 17. PMID 17439641, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DBF4-type zinc finger-containing protein 2
    Names
    a disintegrin and metallopeptidase domain 23a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326473.1 → NP_001313402.1  DBF4-type zinc finger-containing protein 2

      Status: VALIDATED

      Source sequence(s)
      CT009620
      UniProtKB/TrEMBL
      A0A2R8Q097, A0A8M9PZU1
      Related
      ENSDARP00000145801.1, ENSDART00000185321.1
      Conserved Domains (1) summary
      cl02684
      Location:41 → 64
      zf-DBF; DBF zinc finger

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      13189563..13200604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476898.2 → XP_021332573.1  DBF4-type zinc finger-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A2R8Q097, A0A8M9PZU1
      Conserved Domains (1) summary
      cl02684
      Location:41 → 64
      zf-DBF; DBF zinc finger

    2. XM_021476897.2 → XP_021332572.1  DBF4-type zinc finger-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A2R8Q097, A0A8M9PZU1
      Conserved Domains (1) summary
      cl02684
      Location:41 → 64
      zf-DBF; DBF zinc finger

    3. XM_068221756.1 → XP_068077857.1  DBF4-type zinc finger-containing protein 2 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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