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    ccdc77 coiled-coil domain containing 77 [ Danio rerio (zebrafish) ]

    Gene ID: 555400, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc77provided by ZNC
    Official Full Name
    coiled-coil domain containing 77provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050913-54
    See related
    Ensembl:ENSDARG00000102145 AllianceGenome:ZFIN:ZDB-GENE-050913-54
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:114121
    Summary
    Predicted to be active in centrosome. Orthologous to human CCDC77 (coiled-coil domain containing 77). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccdc77 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (3549423..3562782)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (3423634..3437054)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene RAB19, member RAS oncogene family Neighboring gene haloacid dehalogenase like hydrolase domain containing 5 Neighboring gene zgc:194202 Neighboring gene leukotriene B4 receptor 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC114121

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 77

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025478.1 → NP_001020649.1  coiled-coil domain-containing protein 77

      See identical proteins and their annotated locations for NP_001020649.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097180
      UniProtKB/TrEMBL
      Q4V8V6
      Conserved Domains (1) summary
      TIGR02168
      Location:44 → 332
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      3549423..3562782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170662.5 → XP_005170719.1  coiled-coil domain-containing protein 77 isoform X1

      See identical proteins and their annotated locations for XP_005170719.1

      UniProtKB/TrEMBL
      A0A8M6YYE2, E7FBZ5
      Conserved Domains (1) summary
      pfam04094
      Location:201 → 413
      DUF390; Protein of unknown function (DUF390)

    2. XM_005170661.5 → XP_005170718.1  coiled-coil domain-containing protein 77 isoform X1

      See identical proteins and their annotated locations for XP_005170718.1

      UniProtKB/TrEMBL
      A0A8M6YYE2, E7FBZ5
      Related
      ENSDARP00000136677.1, ENSDART00000166312.2
      Conserved Domains (1) summary
      pfam04094
      Location:201 → 413
      DUF390; Protein of unknown function (DUF390)

    3. XM_017354082.3 → XP_017209571.1  coiled-coil domain-containing protein 77 isoform X1

      UniProtKB/TrEMBL
      A0A8M6YYE2, E7FBZ5
      Conserved Domains (1) summary
      pfam04094
      Location:201 → 413
      DUF390; Protein of unknown function (DUF390)
    Nucleotide Protein
    Heading Accession and Version

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