U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm5544 predicted gene 5544 [ Mus musculus (house mouse) ]

    Gene ID: 433632, updated on 27-Nov-2024

    Summary

    Official Symbol
    Gm5544provided by MGI
    Official Full Name
    predicted gene 5544provided by MGI
    Primary source
    MGI:MGI:3648209
    See related
    Ensembl:ENSMUSG00000074388 AllianceGenome:MGI:3648209
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG433632
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gm5544 in Genome Data Viewer
    Location:
    3 F2.2; 3 42.36 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (97837489..97874334)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (97930173..97967018)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 4D interacting protein (myomegalin) Neighboring gene transformer 2 alpha homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_08475 Neighboring gene STARR-positive B cell enhancer ABC_E4564 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:97732943-97733126 Neighboring gene STARR-positive B cell enhancer ABC_E3452 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:97737302-97737411 Neighboring gene SEC22 homolog B, vesicle trafficking protein Neighboring gene VISTA enhancer mm576 Neighboring gene STARR-positive B cell enhancer ABC_E6087 Neighboring gene STARR-positive B cell enhancer ABC_E3453 Neighboring gene notch 2 Neighboring gene predicted gene, 40103 Neighboring gene STARR-seq mESC enhancer starr_08478 Neighboring gene STARR-positive B cell enhancer mm9_chr3:97961638-97961939 Neighboring gene a disintegrin and metallopeptidase domain 30

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Clone Names

    • AC164091.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC433632

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033779.2NP_001028951.1  uncharacterized protein LOC433632

      See identical proteins and their annotated locations for NP_001028951.1

      Status: PREDICTED

      Source sequence(s)
      AK142329
      UniProtKB/TrEMBL
      Q3UQK6
      Related
      ENSMUST00000098828.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      97837489..97874334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)