U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Stpg3 sperm tail PG rich repeat containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 74472, updated on 27-Nov-2024

    Summary

    Official Symbol
    Stpg3provided by MGI
    Official Full Name
    sperm tail PG rich repeat containing 3provided by MGI
    Primary source
    MGI:MGI:1921722
    See related
    Ensembl:ENSMUSG00000036770 AllianceGenome:MGI:1921722
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933433C11Rik
    Summary
    Predicted to be active in cytoskeleton. Orthologous to human STPG3 (sperm-tail PG-rich repeat containing 3). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 72.0) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Stpg3 in Genome Data Viewer
    Location:
    2 A3; 2 17.07 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25102219..25108680, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25212207..25218707, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3362 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:25052129-25052238 Neighboring gene torsin family 4, member A Neighboring gene negative elongation factor complex member B Neighboring gene predicted gene, 22572 Neighboring gene ciliary microtubule inner protein 2A Neighboring gene tubulin, beta 4B class IVB Neighboring gene STARR-seq mESC enhancer starr_03963 Neighboring gene solute carrier family 34 (sodium phosphate), member 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    protein STPG3
    Names
    sperm-tail PG-rich repeat-containing protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399439.1NP_001386368.1  protein STPG3

      Status: VALIDATED

      Source sequence(s)
      AL732309
      UniProtKB/Swiss-Prot
      A2RSX4
    2. NM_028961.2NP_083237.1  protein STPG3

      See identical proteins and their annotated locations for NP_083237.1

      Status: VALIDATED

      Source sequence(s)
      AL732309
      Consensus CDS
      CCDS50525.1
      UniProtKB/Swiss-Prot
      A2RSX4
      UniProtKB/TrEMBL
      Q8CDQ3
      Related
      ENSMUSP00000037603.5, ENSMUST00000043774.11

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      25102219..25108680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011239203.3XP_011237505.1  protein STPG3 isoform X1

      UniProtKB/TrEMBL
      Q8CDQ3