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    Ccdc138 coiled-coil domain containing 138 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499442, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc138provided by RGD
    Official Full Name
    coiled-coil domain containing 138provided by RGD
    Primary source
    RGD:1566050
    See related
    EnsemblRapid:ENSRNOG00000028581 AllianceGenome:RGD:1566050
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566050
    Summary
    Orthologous to human CCDC138 (coiled-coil domain containing 138). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 27.4), Lung (RPKM 25.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc138 in Genome Data Viewer
    Location:
    20q11
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (27037256..27115454)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (26493624..26572367)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (28076784..28158053)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene LIM zinc finger domain containing 1 Neighboring gene uncharacterized LOC134483907 Neighboring gene RAN binding protein 2 Neighboring gene ectodysplasin-A receptor Neighboring gene uncharacterized LOC103694417

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain containing 138; coiled-coil domain-containing protein 138

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432150.1 → NP_001419079.1  coiled-coil domain containing 138

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      D3ZGR6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      27037256..27115454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017601799.3 → XP_017457288.1  coiled-coil domain-containing protein 138 isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZRI4
      Related
      ENSRNOP00000081236.2, ENSRNOT00000116849.2
      Conserved Domains (1) summary
      pfam07798
      Location:196 → 292
      DUF1640; Protein of unknown function (DUF1640)

    2. XM_574765.8 → XP_574765.3  coiled-coil domain-containing protein 138 isoform X1

      Related
      ENSRNOP00000031531.4, ENSRNOT00000030005.6
      Conserved Domains (1) summary
      pfam07798
      Location:230 → 326
      DUF1640; Protein of unknown function (DUF1640)

    3. XM_039099228.2 → XP_038955156.1  coiled-coil domain-containing protein 138 isoform X4

      Conserved Domains (1) summary
      COG1196
      Location:54 → 232
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_017601800.3 → XP_017457289.1  coiled-coil domain-containing protein 138 isoform X3

      Conserved Domains (1) summary
      pfam07798
      Location:126 → 222
      DUF1640; Protein of unknown function (DUF1640)

    5. XM_006256401.5 → XP_006256463.1  coiled-coil domain-containing protein 138 isoform X3

      See identical proteins and their annotated locations for XP_006256463.1

      Conserved Domains (1) summary
      pfam07798
      Location:126 → 222
      DUF1640; Protein of unknown function (DUF1640)

    6. XM_017601802.2 → XP_017457291.1  coiled-coil domain-containing protein 138 isoform X5

    RNA

    1. XR_005497585.2 RNA Sequence

    2. XR_005497586.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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