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    Tex21 testis expressed 21 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299152, updated on 3-Dec-2024

    Summary

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    Official Symbol
    Tex21provided by RGD
    Official Full Name
    testis expressed 21provided by RGD
    Primary source
    RGD:1560347
    See related
    EnsemblRapid:ENSRNOG00000038496 AllianceGenome:RGD:1560347
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 84.3) See more
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    Genomic context

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    See Tex21 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (100664982..100705057, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (94931388..94969409, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (99236653..99274350, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene uncharacterized LOC120103555 Neighboring gene estrogen receptor 2 Neighboring gene ribosomal protein L11, pseudogene 7 Neighboring gene methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 Neighboring gene A-kinase anchoring protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC114468

    General protein information

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    Preferred Names
    testis expressed 21
    Names
    testis expressed gene 21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025658.2 → NP_001020829.1  testis expressed 21 isoform 1

      See identical proteins and their annotated locations for NP_001020829.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A0G2K6S3, Q4V8E7
      Related
      ENSRNOP00000055470.2, ENSRNOT00000058675.5
      Conserved Domains (1) summary
      TIGR02169
      Location:251 → 420
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    2. NM_001434279.1 → NP_001421208.1  testis expressed 21 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A0G2K6S3

    3. NM_001434280.1 → NP_001421209.1  testis expressed 21 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A0G2K6S3

    4. NM_001434281.1 → NP_001421210.1  testis expressed 21 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A0G2K6S3

    5. NM_001434282.1 → NP_001421211.1  testis expressed 21 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A0G2K6S3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      100664982..100705057 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261722.1 → XP_063117792.1  testis expressed 21 isoform X5

      UniProtKB/TrEMBL
      A0A0G2K6S3

    2. XM_063261723.1 → XP_063117793.1  testis expressed 21 isoform X6

      UniProtKB/TrEMBL
      A0A0G2K6S3

    3. XM_063261724.1 → XP_063117794.1  testis expressed 21 isoform X6

      UniProtKB/TrEMBL
      A0A0G2K6S3

    4. XM_063261717.1 → XP_063117787.1  testis expressed 21 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K6S3

    5. XM_063261718.1 → XP_063117788.1  testis expressed 21 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K6S3

    6. XM_063261719.1 → XP_063117789.1  testis expressed 21 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K6S3

    7. XM_063261720.1 → XP_063117790.1  testis expressed 21 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K6S3

    8. XM_063261726.1 → XP_063117796.1  testis expressed 21 isoform X7

    9. XM_039112011.1 → XP_038967939.1  testis expressed 21 isoform X4

      Conserved Domains (1) summary
      COG1196
      Location:276 → 526
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    10. XM_006240226.4 → XP_006240288.1  testis expressed 21 isoform X3

      Conserved Domains (1) summary
      TIGR02169
      Location:294 → 463
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    11. XM_063261725.1 → XP_063117795.1  testis expressed 21 isoform X7

      UniProtKB/TrEMBL
      A0A0G2K6S3

    12. XM_006240227.4 → XP_006240289.1  testis expressed 21 isoform X3

      See identical proteins and their annotated locations for XP_006240289.1

      UniProtKB/TrEMBL
      A0A0G2K6S3
      Conserved Domains (1) summary
      TIGR02169
      Location:294 → 463
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    13. XM_063261721.1 → XP_063117791.1  testis expressed 21 isoform X4

      Related
      ENSRNOP00000100544.1, ENSRNOT00000142886.1
    Nucleotide Protein Strain
    Heading Accession and Version

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