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    R10E11.5 Apolipoprotein A1/A4/E domain protein [ Caenorhabditis elegans ]

    Gene ID: 187778, updated on 18-Sep-2024

    Summary

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    Official Symbol
    R10E11.5
    Official Full Name
    Apolipoprotein A1/A4/E domain protein
    Primary source
    WormBase:WBGene00011217
    Locus tag
    CELE_R10E11.5
    See related
    AllianceGenome:WB:WBGene00011217
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See R10E11.5 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    10
    Sequence:
    Chromosome: III; NC_003281.10 (9785944..9789657, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase 16 kDa proteolipid subunit c 1 Neighboring gene V-type proton ATPase 16 kDa proteolipid subunit c 3 Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene DNA replication licensing factor mcm-6 Neighboring gene Serpentine receptor class XA 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
    2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
    3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Apolipoprotein A1/A4/E domain protein
    NP_001255031.1
    • Confirmed by transcript evidence
    NP_001255032.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      9785944..9789657 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268102.3 → NP_001255031.1  Apolipoprotein A1/A4/E domain protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255031.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P34549
      Conserved Domains (3) summary
      TIGR04527
      Location:314 → 439
      mycoplas_twoTM; two transmembrane protein
      pfam01442
      Location:273 → 441
      Apolipoprotein; Apolipoprotein A1/A4/E domain
      cl21509
      Location:206 → 358
      ApoLp-III_like; Apolipophorin-III and similar insect proteins

    2. NM_001268103.3 → NP_001255032.1  Apolipoprotein A1/A4/E domain protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255032.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G3MTX4
      Conserved Domains (1) summary
      COG0286
      Location:28 → 122
      HsdM; Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P34549.3

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