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    bud-13 BUD13 homolog [ Caenorhabditis elegans ]

    Gene ID: 176266, updated on 27-Dec-2024

    Summary

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    Official Symbol
    bud-13
    Official Full Name
    BUD13 homolog
    Primary source
    WormBase:WBGene00011142
    Locus tag
    CELE_R08D7.1
    See related
    AllianceGenome:WB:WBGene00011142
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2-type spliceosomal complex. Orthologous to human BUD13 (BUD13 homolog). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See bud-13 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (8966054..8967727, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene GRound-Like (grd related) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2 Neighboring gene Eukaryotic translation initiation factor 3 subunit D Neighboring gene Complex 1 LYR protein domain-containing protein;Complex1_LYR_dom domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic transcriptome analysis associated with physiological and chronological aging in Caenorhabditis elegans. Ham S, et al. Genome Res, 2022 Nov-Dec. PMID 36351769, Free PMC Article
    2. The TORC1 phosphoproteome in C. elegans reveals roles in transcription and autophagy. Sewell AK, et al. iScience, 2022 May 20. PMID 35479415, Free PMC Article
    3. The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo. Du Z, et al. Dev Cell, 2015 Sep 14. PMID 26321128, Free PMC Article
    4. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of U2-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BUD13 homolog
    NP_498982.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8966054..8967727 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_066581.6 → NP_498982.1  BUD13 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498982.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P30640
      Conserved Domains (1) summary
      pfam09736
      Location:296 → 441
      Bud13; Pre-mRNA-splicing factor of RES complex
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P30640.1

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