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    Y43F8B.14 SNF2 N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189876, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y43F8B.14
    Official Full Name
    SNF2 N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00012824
    Locus tag
    CELE_Y43F8B.14
    See related
    AllianceGenome:WB:WBGene00012824
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ATP binding activity and ATP-dependent chromatin remodeler activity. Predicted to be involved in chromatin remodeling. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y43F8B.14 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (19452122..19455971, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene SNF2 N-terminal domain-containing protein Neighboring gene Glutaredoxin;Spiroplasma plectrovirus-related protein;Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene DUF1893 domain-containing protein Neighboring gene SNF2 N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SNF2 N-terminal domain-containing protein
    NP_507785.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      19452122..19455971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075384.2 → NP_507785.1  SNF2 N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_507785.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XWW9
      Conserved Domains (2) summary
      pfam00176
      Location:225 → 432
      SNF2_N; SNF2 family N-terminal domain
      cl28899
      Location:69 → 194
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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