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    C15F1.1 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182638, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C15F1.1
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00015794
    Locus tag
    CELE_C15F1.1
    See related
    AllianceGenome:WB:WBGene00015794
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human THAP4 (THAP domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C15F1.1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    7
    Sequence:
    Chromosome: II; NC_003280.10 (6989880..6991686)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L29 Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_001368662.1
    • Confirmed by transcript evidence
    NP_001370980.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6989880..6991686
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001381484.2 → NP_001368662.1  ShKT domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2C9C2Z6
      Conserved Domains (2) summary
      cd07828
      Location:77 → 251
      lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
      pfam01549
      Location:25 → 61
      ShK; ShK domain-like

    2. NM_001383877.2 → NP_001370980.1  ShKT domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2C9C2Z4
      Conserved Domains (2) summary
      cd07828
      Location:77 → 235
      lipocalin_heme-bd-THAP4-like; heme-binding beta-barrel domain of human THAP4, Arabidopsis thaliana nitrobindin, and similar proteins
      pfam01549
      Location:25 → 61
      ShK; ShK domain-like
    Nucleotide Protein
    Heading Accession and Version

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