U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    T20D3.6 HIG1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177762, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    T20D3.6
    Official Full Name
    HIG1 domain-containing protein
    Primary source
    WormBase:WBGene00011859
    Locus tag
    CELE_T20D3.6
    See related
    AllianceGenome:WB:WBGene00011859
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in mitochondrial respirasome assembly. Located in cytoplasm. Orthologous to several human genes including HIGD2A (HIG1 hypoxia inducible domain family member 2A). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See T20D3.6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    3
    Sequence:
    Chromosome: IV; NC_003282.8 (9338587..9339305, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Cytochrome Oxidase Assembly subunits Neighboring gene CHCH domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Solute carrier family 25 member 51 Neighboring gene Vacuolar protein sorting-associated protein 26 Neighboring gene Phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in mitochondrial respirasome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    HIG1 domain-containing protein
    NP_001293845.1
    • Confirmed by transcript evidence
    NP_501643.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      9338587..9339305 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069242.5 → NP_501643.1  HIG1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501643.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O01257
      Conserved Domains (1) summary
      pfam04588
      Location:55 → 105
      HIG_1_N; Hypoxia induced protein conserved region

    2. NM_001306916.3 → NP_001293845.1  HIG1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293845.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      S6F503
      Conserved Domains (1) summary
      pfam04588
      Location:21 → 71
      HIG_1_N; Hypoxia induced protein conserved region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools