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    JC8.4 CMP/dCMP-type deaminase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178281, updated on 9-Dec-2024

    Summary

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    Official Symbol
    JC8.4
    Official Full Name
    CMP/dCMP-type deaminase domain-containing protein
    Primary source
    WormBase:WBGene00010436
    Locus tag
    CELE_JC8.4
    See related
    AllianceGenome:WB:WBGene00010436
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable tRNA-specific adenosine-34 deaminase activity. Predicted to be involved in tRNA wobble adenosine to inosine editing. Orthologous to human ADAT2 (adenosine deaminase tRNA specific 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See JC8.4 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_003282.8 (13243675..13244205)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Large ribosomal subunit protein uL11 Neighboring gene CRC domain-containing protein;Protein lin-54 Neighboring gene Cytochrome c oxidase assembly protein COX11, mitochondrial Neighboring gene Zinc finger, CCHC-type Neighboring gene Transthyretin-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA-specific adenosine-34 deaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA wobble adenosine to inosine editing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CMP/dCMP-type deaminase domain-containing protein
    NP_502546.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      13243675..13244205
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_070145.3 → NP_502546.1  CMP/dCMP-type deaminase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_502546.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95QD6
      Conserved Domains (1) summary
      COG0590
      Location:3 → 155
      TadA; tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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