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    Cimip5 ciliary microtubule inner protein 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690276, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Cimip5provided by RGD
    Official Full Name
    ciliary microtubule inner protein 5provided by RGD
    Primary source
    RGD:1582838
    See related
    EnsemblRapid:ENSRNOG00000024338 AllianceGenome:RGD:1582838
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    C6h2orf50
    Summary
    Predicted to be located in cilium. Orthologous to human CIMIP5 (ciliary microtubule inner protein 5). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 14.5), Kidney (RPKM 7.4) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cimip5 in Genome Data Viewer
    Location:
    6q16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (45520575..45525810, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (39792416..39797072, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (42306788..42313322, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene Rho-associated coiled-coil containing protein kinase 2 Neighboring gene uncharacterized LOC134479346 Neighboring gene solute carrier family 66 member 3 Neighboring gene potassium voltage-gated channel modifier subfamily F member 1 Neighboring gene protein disulfide isomerase family A, member 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cilium ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C2orf50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001415120.1 → NP_001402049.1  uncharacterized protein C2orf50 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HAU0, D4A5F3
      Related
      ENSRNOP00000096787.2, ENSRNOT00000096580.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      45520575..45525810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262519.1 → XP_063118589.1  uncharacterized protein C2orf50 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6ATY8, D4A5F3
      Related
      ENSRNOP00000030116.5, ENSRNOT00000033550.6

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001109573.1: Suppressed sequence

      Description
      NM_001109573.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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