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    rsr-1 PWI domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 173013, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rsr-1
    Official Full Name
    PWI domain-containing protein
    Primary source
    WormBase:WBGene00004706
    Locus tag
    CELE_F28D9.1
    See related
    AllianceGenome:WB:WBGene00004706
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in hypodermis. Orthologous to human SRRM1 (serine and arginine repetitive matrix 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rsr-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (11177848..11182063, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene N-acetylglucosaminylphosphatidylinositol deacetylase Neighboring gene Transmembrane protein 242 Neighboring gene ncRNA Neighboring gene Serpentine Receptor, class H;Serpentine Receptor, class T Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Ref/Aly proteins are dispensable for mRNA export and development in Caenorhabditis elegans. Longman D, et al. RNA, 2003 Jul. PMID 12810921, Free PMC Article
    2. Multiple phenotypes resulting from a mutagenesis screen for pharynx muscle mutations in Caenorhabditis elegans. Ferrier A, et al. PLoS One, 2011. PMID 22073173, Free PMC Article
    3. An evolutionarily conserved role for SRm160 in 3'-end processing that functions independently of exon junction complex formation. McCracken S, et al. J Biol Chem, 2003 Nov 7. PMID 12944400
    4. Functional characterization of SR and SR-related genes in Caenorhabditis elegans. Longman D, et al. EMBO J, 2000 Apr 3. PMID 10747030, Free PMC Article
    5. Genes involved in pre-mRNA 3'-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen. Cui M, et al. Proc Natl Acad Sci U S A, 2008 Oct 28. PMID 18946043, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    PWI domain-containing protein
    NP_001370022.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      11177848..11182063 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001383730.2 → NP_001370022.1  PWI domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O62185
      Conserved Domains (1) summary
      pfam01480
      Location:46 → 115
      PWI; PWI domain
    Nucleotide Protein
    Heading Accession and Version

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