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    C14C6.5 ShKT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178574, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C14C6.5
    Official Full Name
    ShKT domain-containing protein
    Primary source
    WormBase:WBGene00015759
    Locus tag
    CELE_C14C6.5
    See related
    AllianceGenome:WB:WBGene00015759
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C14C6.5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (536628..537418)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nuclear receptor domain-containing protein Neighboring gene NR LBD domain-containing protein Neighboring gene Nuclear Hormone Receptor family Neighboring gene L-Fucosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    ShKT domain-containing protein
    NP_001300054.1
    • Confirmed by transcript evidence
    NP_001379668.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      536628..537418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392468.1 → NP_001379668.1  ShKT domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      O44667
      Conserved Domains (2) summary
      pfam04942
      Location:23 → 52
      CC; CC domain
      pfam01549
      Location:137 → 166
      ShK; ShK domain-like

    2. NM_001313125.3 → NP_001300054.1  ShKT domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AXM4
      Conserved Domains (1) summary
      pfam01549
      Location:73 → 102
      ShK; ShK domain-like
    Nucleotide Protein
    Heading Accession and Version

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