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    EPHB1 EPH receptor B1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717211, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EPHB1provided by VGNC
    Official Full Name
    EPH receptor B1provided by VGNC
    Primary source
    VGNC:VGNC:72241
    Locus tag
    EGK_12084
    See related
    Ensembl:ENSMMUG00000021334
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See EPHB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (37002133..37461334)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (166740549..167198499, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676248 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114676249 Neighboring gene uncharacterized LOC114676250 Neighboring gene uncharacterized LOC114676127

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane-ephrin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ephrin type-B receptor 1
    XP_001115263.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      37002133..37461334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001115263.4 → XP_001115263.1  ephrin type-B receptor 1

      See identical proteins and their annotated locations for XP_001115263.1

      UniProtKB/TrEMBL
      A0A1D5QF63, A0A8J8XMR6, G7MJQ5, I0FHF4
      Related
      ENSMMUP00000046682.2, ENSMMUT00000054382.2
      Conserved Domains (5) summary
      cd05065
      Location:614 → 882
      PTKc_EphR_B; Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors
      cd09551
      Location:908 → 975
      SAM_EPH-B1; SAM domain of EPH-B1 subfamily of tyrosine kinase receptors
      cd10476
      Location:20 → 195
      EphR_LBD_B1; Ligand Binding Domain of Ephrin type-B Receptor 1
      pfam00041
      Location:435 → 518
      fn3; Fibronectin type III domain
      pfam14575
      Location:542 → 616
      EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials