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    CLCA1 chloride channel accessory 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 574295, updated on 11-Apr-2024

    Summary

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    Gene symbol
    CLCA1
    Gene description
    chloride channel accessory 1
    See related
    Ensembl:ENSMMUG00000006836
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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    Genomic context

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    See CLCA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (137979225..138011748, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (86652982..86685483)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999533 Neighboring gene chloride channel accessory 4 Neighboring gene cell division cycle-associated protein 4-like Neighboring gene chloride channel accessory 2 Neighboring gene outer dense fiber of sperm tails 2 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables intracellularly calcium-gated chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloride transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-activated chloride channel regulator 1
    Names
    CLCA family member 1, chloride channel regulator
    calcium-activated chloride channel family member 1
    chloride channel regulator 1
    chloride channel, calcium activated, family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032912.1 → NP_001028084.1  calcium-activated chloride channel regulator 1 precursor

      See identical proteins and their annotated locations for NP_001028084.1

      Status: PROVISIONAL

      Source sequence(s)
      AY581306
      UniProtKB/Swiss-Prot
      Q6PT52
      UniProtKB/TrEMBL
      A0A5F7ZX47
      Related
      ENSMMUP00000070204.1, ENSMMUT00000108604.1
      Conserved Domains (2) summary
      cd00198
      Location:305 → 458
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      pfam08434
      Location:25 → 909
      CLCA; Calcium-activated chloride channel

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      137979225..138011748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6PT52.1 GenPept UniProtKB/Swiss-Prot:Q6PT52

    Gene LinkOut

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