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    LHX6 LIM homeobox 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698587, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LHX6provided by VGNC
    Official Full Name
    LIM homeobox 6provided by VGNC
    Primary source
    VGNC:VGNC:74100
    See related
    Ensembl:ENSMMUG00000011453
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LHX6 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (20481775..20508166)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (17040073..17066461)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene prostaglandin-endoperoxide synthase 1 Neighboring gene mitochondrial ribosome recycling factor Neighboring gene RNA binding motif protein 18 Neighboring gene MORN repeat containing 5 Neighboring gene NADH:ubiquinone oxidoreductase subunit A8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in forebrain neuron development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      20481775..20508166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001089041.4 → XP_001089041.2  LIM/homeobox protein Lhx6 isoform X1

      See identical proteins and their annotated locations for XP_001089041.2

      UniProtKB/TrEMBL
      A0A1D5RDV1, G7NFV7
      Related
      ENSMMUP00000058494.1, ENSMMUT00000078917.2
      Conserved Domains (3) summary
      cd09380
      Location:99 → 152
      LIM1_Lhx6; The first LIM domain of Lhx6
      cd09382
      Location:160 → 214
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:252 → 305
      Homeobox; Homeobox domain

    2. XM_001088818.4 → XP_001088818.2  LIM/homeobox protein Lhx6 isoform X2

      See identical proteins and their annotated locations for XP_001088818.2

      UniProtKB/TrEMBL
      A0A1D5QBK8, G7NFV7
      Related
      ENSMMUP00000045427.2, ENSMMUT00000075747.2
      Conserved Domains (3) summary
      cd09380
      Location:99 → 152
      LIM1_Lhx6; The first LIM domain of Lhx6
      cd09382
      Location:160 → 214
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:252 → 305
      Homeobox; Homeobox domain

    3. XM_028834887.1 → XP_028690720.1  LIM/homeobox protein Lhx6 isoform X3

      UniProtKB/TrEMBL
      G7NFV7
      Conserved Domains (3) summary
      cd09380
      Location:70 → 123
      LIM1_Lhx6; The first LIM domain of Lhx6
      cd09382
      Location:131 → 185
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:223 → 276
      Homeobox; Homeobox domain

    4. XM_015116907.2 → XP_014972393.1  LIM/homeobox protein Lhx6 isoform X4

      Conserved Domains (2) summary
      cd09382
      Location:11 → 65
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:103 → 156
      Homeobox; Homeobox domain

    5. XM_002799988.3 → XP_002800034.1  LIM/homeobox protein Lhx6 isoform X5

      See identical proteins and their annotated locations for XP_002800034.1

      UniProtKB/TrEMBL
      G7NFV7
      Conserved Domains (3) summary
      cd09380
      Location:88 → 141
      LIM1_Lhx6; The first LIM domain of Lhx6
      cd09382
      Location:149 → 203
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:241 → 294
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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