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    SFTPD surfactant protein D [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 678657, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SFTPDprovided by VGNC
    Official Full Name
    surfactant protein Dprovided by VGNC
    Primary source
    VGNC:VGNC:77190
    Locus tag
    EGK_19692
    See related
    Ensembl:ENSMMUG00000002787
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SFTPD in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (58174264..58184555)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (52636227..52646517)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 254 Neighboring gene nuclear nucleic acid-binding protein C1D pseudogene Neighboring gene uncharacterized LOC114669966 Neighboring gene mannose binding lectin 1 Neighboring gene surfactant protein A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Macaque multimeric soluble CD40 ligand and GITR ligand constructs are immunostimulatory molecules in vitro. Stone GW, et al. Clin Vaccine Immunol, 2006 Nov. PMID 16988005, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    pulmonary surfactant-associated protein D
    Names
    PSP-D
    SP-D
    lung surfactant protein D
    surfactant, pulmonary-associated protein D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040193.1 → NP_001035283.1  pulmonary surfactant-associated protein D precursor

      See identical proteins and their annotated locations for NP_001035283.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ457096
      UniProtKB/Swiss-Prot
      Q1PBC5
      UniProtKB/TrEMBL
      A0A5F8ABG3, G7N227
      Conserved Domains (3) summary
      cd03591
      Location:262 → 375
      CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
      pfam01391
      Location:130 → 202
      Collagen; Collagen triple helix repeat (20 copies)
      pfam09006
      Location:224 → 269
      Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      58174264..58184555
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015147131.2 → XP_015002617.1  pulmonary surfactant-associated protein D isoform X1

      UniProtKB/Swiss-Prot
      Q1PBC5
      UniProtKB/TrEMBL
      A0A5F8ABG3, G7N227
      Related
      ENSMMUP00000003737.2, ENSMMUT00000003955.4
      Conserved Domains (3) summary
      cd03591
      Location:262 → 375
      CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
      pfam01391
      Location:130 → 202
      Collagen; Collagen triple helix repeat (20 copies)
      pfam09006
      Location:224 → 269
      Surfac_D-trimer; Lung surfactant protein D coiled-coil trimerization
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PBC5.1 GenPept UniProtKB/Swiss-Prot:Q1PBC5

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