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    TUT4 terminal uridylyl transferase 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713406, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TUT4provided by VGNC
    Official Full Name
    terminal uridylyl transferase 4provided by VGNC
    Primary source
    VGNC:VGNC:79759
    See related
    Ensembl:ENSMMUG00000017023
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    ZCCHC11
    Orthologs
    human mouse all
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    Genomic context

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    See TUT4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (171905724..172036592)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (52006214..52143661, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene shisa like 2A Neighboring gene glutathione peroxidase 7 Neighboring gene small nucleolar RNA U13 Neighboring gene pre-mRNA processing factor 38A Neighboring gene origin recognition complex subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA uridylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA 3' uridylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    terminal uridylyltransferase 4
    Names
    zinc finger CCHC-type containing 11
    XP_028689605.1
    XP_028689606.1
    XP_028689609.1
    XP_028689610.1
    XP_028689612.1
    XP_028689613.1
    XP_028689614.1
    XP_028689616.1
    XP_028689617.1
    XP_028689621.1
    XP_028689624.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      171905724..172036592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028833780.1 → XP_028689613.1  terminal uridylyltransferase 4 isoform X6

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (7) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1374
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam09606
      Location:1373 → 1623
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    2. XM_028833783.1 → XP_028689616.1  terminal uridylyltransferase 4 isoform X8

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (5) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1369
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam09606
      Location:1368 → 1618
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase

    3. XM_028833772.1 → XP_028689605.1  terminal uridylyltransferase 4 isoform X1

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (7) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1374
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam09606
      Location:1373 → 1632
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    4. XM_028833773.1 → XP_028689606.1  terminal uridylyltransferase 4 isoform X2

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (6) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1374
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PHA03247
      Location:1404 → 1590
      PHA03247; large tegument protein UL36; Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain

    5. XM_028833784.1 → XP_028689617.1  terminal uridylyltransferase 4 isoform X9

      UniProtKB/TrEMBL
      F6Y632
      Conserved Domains (7) summary
      cd05402
      Location:947 → 1059
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1250 → 1345
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      COG5260
      Location:944 → 1231
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam09606
      Location:1344 → 1603
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    6. XM_028833788.1 → XP_028689621.1  terminal uridylyltransferase 4 isoform X10

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (7) summary
      cd05402
      Location:899 → 1017
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1208 → 1303
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PHA03247
      Location:1334 → 1520
      PHA03247; large tegument protein UL36; Provisional
      COG5260
      Location:857 → 1189
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:556 → 605
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 544
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    7. XM_028833776.1 → XP_028689609.1  terminal uridylyltransferase 4 isoform X3

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (7) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1369
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PHA03247
      Location:1400 → 1586
      PHA03247; large tegument protein UL36; Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    8. XM_028833791.1 → XP_028689624.1  terminal uridylyltransferase 4 isoform X11

      UniProtKB/TrEMBL
      A0A5F8ARV4
      Conserved Domains (6) summary
      PTZ00368
      Location:1195 → 1290
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PHA03247
      Location:1321 → 1507
      PHA03247; large tegument protein UL36; Provisional
      COG5260
      Location:928 → 1176
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:1099 → 1152
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    9. XM_028833777.1 → XP_028689610.1  terminal uridylyltransferase 4 isoform X4

      UniProtKB/TrEMBL
      F7HQZ4, H9FRZ0
      Related
      ENSMMUP00000022403.4, ENSMMUT00000023933.4
      Conserved Domains (7) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1374
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PHA03247
      Location:1405 → 1591
      PHA03247; large tegument protein UL36; Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    10. XM_028833779.1 → XP_028689612.1  terminal uridylyltransferase 4 isoform X5

      UniProtKB/TrEMBL
      F7HQZ4
      Conserved Domains (7) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1374
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      PHA03247
      Location:1404 → 1590
      PHA03247; large tegument protein UL36; Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
      pfam19088
      Location:264 → 599
      TUTase; TUTase nucleotidyltransferase domain
      NF033645
      Location:14 → 203
      pilus_FilE; putative pilus assembly protein FilE

    11. XM_028833781.1 → XP_028689614.1  terminal uridylyltransferase 4 isoform X7

      UniProtKB/TrEMBL
      F7HQZ4, H9FRY9
      Related
      ENSMMUP00000018823.4, ENSMMUT00000020110.4
      Conserved Domains (5) summary
      cd05402
      Location:970 → 1088
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      PTZ00368
      Location:1279 → 1369
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      COG5260
      Location:928 → 1260
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam07271
      Location:1398 → 1586
      Cytadhesin_P30; Cytadhesin P30/P32
      pfam03828
      Location:627 → 676
      PAP_assoc; Cid1 family poly A polymerase
    Nucleotide Protein
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