RUNX1 RUNX family transcription factor 1 [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: RUNX1provided by VGNC
Official Full Name: RUNX family transcription factor 1provided by VGNC
Primary source: VGNC:VGNC:76946
See related: Ensembl:ENSMMUG00000001649
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	3	NC_041756.1 (11515197..11791957)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	3	NC_027895.1 (11647610..11924988)

Chromosome 3 - NC_041756.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

GDB:185177 (e-PCR)
- UniSTS:155432

NoName (e-PCR)
- UniSTS:485676

Runx1 (e-PCR), detects polymorphism
- UniSTS:259137

RUNX1_4181 (e-PCR)
- UniSTS:462924

SHGC-6907 (e-PCR)
- UniSTS:66893

RH92717 (e-PCR)
- UniSTS:92530

SHGC-82960 (e-PCR)
- UniSTS:96117

AI462102 (e-PCR)
- UniSTS:166017

D21S1706 (e-PCR)
- UniSTS:150422

SHGC-170125 (e-PCR)
- UniSTS:173751

SHGC-6871 (e-PCR)
- UniSTS:86717

G34658 (e-PCR)
- UniSTS:48589

RH27207 (e-PCR)
- UniSTS:84944

RH98631 (e-PCR)
- UniSTS:92121

SHGC-87606 (e-PCR)
- UniSTS:56027

Runx1 (e-PCR), detects polymorphism
- UniSTS:547548

RH81059 (e-PCR)
- UniSTS:92392

SHGC-78899 (e-PCR)
- UniSTS:95730

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in hemopoiesis	IEA Inferred from Electronic Annotation more info	PubMed
involved_in neuron differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of cell differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: runt-related transcription factor 1

Names: runt related transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001265962.1 → NP_001252891.1 runt-related transcription factor 1

See identical proteins and their annotated locations for NP_001252891.1

Status: PROVISIONAL

Source sequence(s)

JU471232

UniProtKB/TrEMBL

F7G6T6, G7MMU0, H9YWG8

Related

ENSMMUP00000075631.1, ENSMMUT00000080762.1

Conserved Domains (3) summary

pfam00853
Location:85 → 206

Runt; Runt domain

pfam08504
Location:389 → 480

RunxI; Runx inhibition domain

pfam08580
Location:239 → 426

KAR9; Yeast cortical protein KAR9

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041756.1 Reference Mmul_10 Primary Assembly

Range

11515197..11791957

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015132890.2 → XP_014988376.1 runt-related transcription factor 1 isoform X1

UniProtKB/TrEMBL

F7G6T6, G7MMU0, H9YWG8

Related

ENSMMUP00000002207.4, ENSMMUT00000002336.4

Conserved Domains (3) summary

pfam00853
Location:85 → 206

Runt; Runt domain

pfam08504
Location:389 → 480

RunxI; Runx inhibition domain

pfam08580
Location:239 → 426

KAR9; Yeast cortical protein KAR9
XM_015132891.2 → XP_014988377.1 runt-related transcription factor 1 isoform X3

UniProtKB/TrEMBL

F6PP34

Related

ENSMMUP00000003247.4, ENSMMUT00000003437.4

Conserved Domains (2) summary

pfam00853
Location:85 → 205

Runt; Runt domain

pfam08504
Location:325 → 416

RunxI; Runx inhibition domain
XM_028844819.1 → XP_028700652.1 runt-related transcription factor 1 isoform X2

UniProtKB/TrEMBL

F7G6U0, H9ZEP7

Related

ENSMMUP00000002205.4, ENSMMUT00000002334.4

Conserved Domains (2) summary

pfam00853
Location:68 → 194

Runt; Runt domain

pfam08504
Location:376 → 467

RunxI; Runx inhibition domain
XM_028844818.1 → XP_028700651.1 runt-related transcription factor 1 isoform X1

UniProtKB/TrEMBL

F7G6T6, G7MMU0, H9YWG8

Conserved Domains (3) summary

pfam00853
Location:85 → 206

Runt; Runt domain

pfam08504
Location:389 → 480

RunxI; Runx inhibition domain

pfam08580
Location:239 → 426

KAR9; Yeast cortical protein KAR9