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    TGFB1I1 transforming growth factor beta 1 induced transcript 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714172, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TGFB1I1provided by VGNC
    Official Full Name
    transforming growth factor beta 1 induced transcript 1provided by VGNC
    Primary source
    VGNC:VGNC:78333
    Locus tag
    EGK_12726
    See related
    Ensembl:ENSMMUG00000000896
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See TGFB1I1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (28924542..28930264)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (29317670..29323403)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing 5 Neighboring gene uncharacterized LOC106994995 Neighboring gene solute carrier family 5 member 2 Neighboring gene RUS family member 1 Neighboring gene alpha hemoglobin stabilizing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transforming growth factor beta-1-induced transcript 1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266172.1 → NP_001253101.1  transforming growth factor beta-1-induced transcript 1 protein

      See identical proteins and their annotated locations for NP_001253101.1

      Status: PROVISIONAL

      Source sequence(s)
      JV636344
      UniProtKB/TrEMBL
      A0A1D5QK16, F6T778, I2CXJ9
      Related
      ENSMMUP00000001196.2, ENSMMUT00000001276.3
      Conserved Domains (5) summary
      cd09337
      Location:287 → 338
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cd09409
      Location:346 → 398
      LIM3_Paxillin; The third LIM domain of paxillin
      cd09412
      Location:405 → 456
      LIM4_Leupaxin; The fourth LIM domain of Leupaxin
      cd09336
      Location:228 → 280
      LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
      pfam03535
      Location:86 → 106
      Paxillin; Paxillin family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      28924542..28930264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028840578.1 → XP_028696411.1  transforming growth factor beta-1-induced transcript 1 protein isoform X2

      UniProtKB/TrEMBL
      F6T1E1, G7NQZ4
      Related
      ENSMMUP00000048389.2, ENSMMUT00000073676.2
      Conserved Domains (4) summary
      cd09337
      Location:270 → 321
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cd09412
      Location:388 → 439
      LIM4_Leupaxin; The fourth LIM domain of Leupaxin
      cd09336
      Location:211 → 263
      LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
      cl02475
      Location:329 → 381
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    2. XM_028840577.1 → XP_028696410.1  transforming growth factor beta-1-induced transcript 1 protein isoform X1

      UniProtKB/TrEMBL
      A0A1D5QK16
      Conserved Domains (5) summary
      cd09337
      Location:295 → 346
      LIM2_Paxillin_like; The second LIM domain of the paxillin like protein family
      cd09409
      Location:354 → 406
      LIM3_Paxillin; The third LIM domain of paxillin
      cd09412
      Location:413 → 464
      LIM4_Leupaxin; The fourth LIM domain of Leupaxin
      cd09336
      Location:236 → 288
      LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
      pfam03535
      Location:94 → 114
      Paxillin; Paxillin family
    Nucleotide Protein
    Heading Accession and Version

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