COL6A3 collagen type VI alpha 3 chain [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: COL6A3provided by VGNC
Official Full Name: collagen type VI alpha 3 chainprovided by VGNC
Primary source: VGNC:VGNC:71303
See related: Ensembl:ENSMMUG00000014049
Gene type: protein coding
RefSeq status: MODEL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 45

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	12	NC_041765.1 (124721126..124813548, complement)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	12	NC_027904.1 (120047890..120140963, complement)

Chromosome 12 - NC_041765.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

COL6A3_1840 (e-PCR)
- UniSTS:280619

WI-19458 (e-PCR)
- UniSTS:68797

RH18099 (e-PCR)
- UniSTS:4294

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables serine-type endopeptidase inhibitor activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-3(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041765.1 Reference Mmul_10 Primary Assembly

Range

124721126..124813548 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002799096.3 → XP_002799142.3 collagen alpha-3(VI) chain isoform X6

UniProtKB/TrEMBL

F6S395, I2CWG4

Related

ENSMMUP00000037347.3, ENSMMUT00000044332.3

Conserved Domains (8) summary

pfam01391
Location:1707 → 1764

Collagen; Collagen triple helix repeat (20 copies)

smart00060
Location:2384 → 2452

FN3; Fibronectin type 3 domain

smart00327
Location:1231 → 1387

VWA; von Willebrand factor (vWF) type A domain

cd00109
Location:2501 → 2553

KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

cd01481
Location:828 → 992

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

pfam07432
Location:2292 → 2331

Hc1; Histone H1-like protein Hc1

pfam00092
Location:1032 → 1204

VWA; von Willebrand factor type A domain

cl00057
Location:421 → 584

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_015111411.2 → XP_014966897.2 collagen alpha-3(VI) chain isoform X5

UniProtKB/TrEMBL

I2CWG4

Conserved Domains (8) summary

pfam01391
Location:1907 → 1964

Collagen; Collagen triple helix repeat (20 copies)

smart00060
Location:2584 → 2652

FN3; Fibronectin type 3 domain

smart00327
Location:1431 → 1587

VWA; von Willebrand factor (vWF) type A domain

cd00109
Location:2701 → 2753

KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

cd01481
Location:1028 → 1192

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

pfam07432
Location:2492 → 2531

Hc1; Histone H1-like protein Hc1

pfam00092
Location:1232 → 1404

VWA; von Willebrand factor type A domain

cl00057
Location:621 → 784

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_001084624.4 → XP_001084624.3 collagen alpha-3(VI) chain isoform X4

UniProtKB/TrEMBL

F7AG82, I2CWG4

Related

ENSMMUP00000018478.4, ENSMMUT00000019737.4

Conserved Domains (8) summary

pfam01391
Location:2108 → 2165

Collagen; Collagen triple helix repeat (20 copies)

smart00060
Location:2785 → 2853

FN3; Fibronectin type 3 domain

smart00327
Location:1632 → 1788

VWA; von Willebrand factor (vWF) type A domain

cd00109
Location:2902 → 2954

KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

cd01481
Location:1229 → 1393

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

pfam07432
Location:2693 → 2732

Hc1; Histone H1-like protein Hc1

pfam00092
Location:1433 → 1605

VWA; von Willebrand factor type A domain

cl00057
Location:822 → 985

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_015111408.2 → XP_014966894.2 collagen alpha-3(VI) chain isoform X3

UniProtKB/TrEMBL

A0A1D5R578, G7N991

Related

ENSMMUP00000055465.2, ENSMMUT00000063617.2

Conserved Domains (8) summary

pfam01391
Location:2114 → 2171

Collagen; Collagen triple helix repeat (20 copies)

smart00060
Location:2791 → 2859

FN3; Fibronectin type 3 domain

smart00327
Location:1638 → 1794

VWA; von Willebrand factor (vWF) type A domain

cd00109
Location:2908 → 2960

KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

cd01481
Location:1235 → 1399

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

pfam07432
Location:2699 → 2738

Hc1; Histone H1-like protein Hc1

pfam00092
Location:1439 → 1611

VWA; von Willebrand factor type A domain

cl00057
Location:828 → 991

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_015111404.2 → XP_014966890.2 collagen alpha-3(VI) chain isoform X2

UniProtKB/TrEMBL

F7AG99, G7N991

Related

ENSMMUP00000018476.4, ENSMMUT00000019734.4

Conserved Domains (8) summary

pfam01391
Location:2314 → 2371

Collagen; Collagen triple helix repeat (20 copies)

smart00060
Location:2991 → 3059

FN3; Fibronectin type 3 domain

smart00327
Location:1838 → 1994

VWA; von Willebrand factor (vWF) type A domain

cd00109
Location:3108 → 3160

KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

cd01481
Location:1435 → 1599

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

pfam07432
Location:2899 → 2938

Hc1; Histone H1-like protein Hc1

pfam00092
Location:1639 → 1811

VWA; von Willebrand factor type A domain

cl00057
Location:1028 → 1191

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_028831264.1 → XP_028687097.1 collagen alpha-3(VI) chain isoform X1

UniProtKB/TrEMBL

G7N991

Conserved Domains (8) summary

pfam01391
Location:2313 → 2370

Collagen; Collagen triple helix repeat (20 copies)

smart00060
Location:2990 → 3058

FN3; Fibronectin type 3 domain

smart00327
Location:1837 → 1993

VWA; von Willebrand factor (vWF) type A domain

cd00109
Location:3107 → 3159

KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.

cd01481
Location:1434 → 1598

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

pfam07432
Location:2898 → 2937

Hc1; Histone H1-like protein Hc1

pfam00092
Location:1638 → 1810

VWA; von Willebrand factor type A domain

cl00057
Location:1028 → 1191

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_028831265.1 → XP_028687098.1 collagen alpha-3(VI) chain isoform X7

Conserved Domains (2) summary

cd01481
Location:269 → 433

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

cl00057
Location:853 → 1016

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
XM_015111413.2 → XP_014966899.1 collagen alpha-3(VI) chain isoform X8

Conserved Domains (2) summary

cd01481
Location:37 → 201

vWA_collagen_alpha3-VI-like; VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than ...

cl00057
Location:621 → 784

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...