U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COL24A1 collagen type XXIV alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711713, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    COL24A1provided by VGNC
    Official Full Name
    collagen type XXIV alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:106343
    See related
    Ensembl:ENSMMUG00000056386
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COL24A1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    62
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (138309198..138705768)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (85958206..86355440, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999515 Neighboring gene outer dense fiber of sperm tails 2 like Neighboring gene uncharacterized LOC114671742 Neighboring gene uncharacterized LOC106999510 Neighboring gene zinc finger HIT-type containing 6 Neighboring gene uncharacterized LOC106999504 Neighboring gene cellular communication network factor 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha-1(XXIV) chain

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      138309198..138705768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015144267.2 → XP_014999753.2  collagen alpha-1(XXIV) chain isoform X5

      Conserved Domains (5) summary
      pfam01391
      Location:1303 → 1362
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03157
      Location:938 → 1438
      Glutenin_hmw; High molecular weight glutenin subunit
      pfam09606
      Location:783 → 1058
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl02436
      Location:1515 → 1558
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:41 → 227
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    2. XM_028831815.1 → XP_028687648.1  collagen alpha-1(XXIV) chain isoform X2

      UniProtKB/TrEMBL
      A0A5F7Z8Y8
      Conserved Domains (4) summary
      pfam01391
      Location:1297 → 1356
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03157
      Location:918 → 1432
      Glutenin_hmw; High molecular weight glutenin subunit
      cl02436
      Location:1510 → 1707
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:41 → 227
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    3. XM_001109249.4 → XP_001109249.2  collagen alpha-1(XXIV) chain isoform X1

      UniProtKB/TrEMBL
      A0A5F7Z8Y8
      Related
      ENSMMUP00000062036.1, ENSMMUT00000106498.1
      Conserved Domains (4) summary
      pfam01391
      Location:1303 → 1362
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03157
      Location:924 → 1438
      Glutenin_hmw; High molecular weight glutenin subunit
      cl02436
      Location:1516 → 1713
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:41 → 227
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    4. XM_028831819.1 → XP_028687652.1  collagen alpha-1(XXIV) chain isoform X3

      UniProtKB/TrEMBL
      A0A5F7Z8Y8
      Conserved Domains (4) summary
      pfam01391
      Location:570 → 628
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03157
      Location:908 → 1414
      Glutenin_hmw; High molecular weight glutenin subunit
      cl02436
      Location:1504 → 1701
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:41 → 227
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    5. XM_028831822.1 → XP_028687655.1  collagen alpha-1(XXIV) chain isoform X4

      UniProtKB/TrEMBL
      A0A5F7Z8Y8
      Conserved Domains (4) summary
      pfam01391
      Location:1285 → 1344
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03157
      Location:906 → 1420
      Glutenin_hmw; High molecular weight glutenin subunit
      cl02436
      Location:1498 → 1695
      COLFI; Fibrillar collagen C-terminal domain
      cl22861
      Location:41 → 227
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    6. XM_028831828.1 → XP_028687661.1  collagen alpha-1(XXIV) chain isoform X6

      UniProtKB/TrEMBL
      A0A5F7Z8Y8
      Conserved Domains (3) summary
      pfam01391
      Location:967 → 1026
      Collagen; Collagen triple helix repeat (20 copies)
      pfam09606
      Location:447 → 722
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cl02436
      Location:1180 → 1377
      COLFI; Fibrillar collagen C-terminal domain

    RNA

    1. XR_003721808.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.