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    ZNF343 zinc finger protein 343 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716613, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZNF343provided by VGNC
    Official Full Name
    zinc finger protein 343provided by VGNC
    Primary source
    VGNC:VGNC:97847
    Locus tag
    EGK_02596
    See related
    Ensembl:ENSMMUG00000010054
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human all
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    Genomic context

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    See ZNF343 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (63998709..64020652)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (35305437..35327020, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD110 Neighboring gene NOP56 ribonucleoprotein Neighboring gene transmembrane channel like 2 Neighboring gene small nuclear ribonucleoprotein polypeptides B and B1 Neighboring gene transglutaminase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytokine production IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 343

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260644.1 → NP_001247573.1  zinc finger protein 343

      See identical proteins and their annotated locations for NP_001247573.1

      Status: PROVISIONAL

      Source sequence(s)
      JU473241
      UniProtKB/TrEMBL
      A0A8J8Y0U8, F6TEW9, F7CRQ6, G7N2S8
      Related
      ENSMMUP00000013145.2, ENSMMUT00000014036.4
      Conserved Domains (6) summary
      smart00349
      Location:62 → 106
      KRAB; krueppel associated box
      COG5048
      Location:266 → 592
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:355 → 375
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:297 → 319
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:62 → 101
      KRAB; KRAB box
      pfam13465
      Location:396 → 420
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      63998709..64020652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827397.1 → XP_028683230.1  zinc finger protein 343 isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:271 → 444
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:355 → 375
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:61 → 101
      KRAB; KRAB box

    2. XM_015149350.2 → XP_015004836.1  zinc finger protein 343 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y0U8, F6TEW9, F7CRQ6, G7N2S8
      Related
      ENSMMUP00000037631.3, ENSMMUT00000044608.3
      Conserved Domains (6) summary
      smart00349
      Location:62 → 106
      KRAB; krueppel associated box
      COG5048
      Location:266 → 592
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:355 → 375
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:297 → 319
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:62 → 101
      KRAB; KRAB box
      pfam13465
      Location:396 → 420
      zf-H2C2_2; Zinc-finger double domain

    3. XM_028827396.1 → XP_028683229.1  zinc finger protein 343 isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:265 → 591
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:354 → 374
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:61 → 101
      KRAB; KRAB box
    Nucleotide Protein
    Heading Accession and Version

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