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    SFSWAP splicing factor SWAP [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709551, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SFSWAPprovided by VGNC
    Official Full Name
    splicing factor SWAPprovided by VGNC
    Primary source
    VGNC:VGNC:77188
    Locus tag
    EGK_04367
    See related
    Ensembl:ENSMMUG00000020343
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SFRS8
    Orthologs
    human mouse all
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    Genomic context

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    See SFSWAP in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (131534802..131628921)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (132133770..132229554)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671094 Neighboring gene uncharacterized LOC114671095 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor, suppressor of white-apricot homolog
    Names
    splicing factor SWAP homolog
    splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      131534802..131628921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002798847.3 → XP_002798893.2  splicing factor, suppressor of white-apricot homolog isoform X4

      UniProtKB/TrEMBL
      F6W9M1
      Related
      ENSMMUP00000026771.3, ENSMMUT00000028613.4
      Conserved Domains (3) summary
      smart00648
      Location:209 → 262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35 → 155
      DRY_EERY; Alternative splicing regulator
      NF033838
      Location:633 → 773
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    2. XM_001105117.4 → XP_001105117.1  splicing factor, suppressor of white-apricot homolog isoform X1

      See identical proteins and their annotated locations for XP_001105117.1

      UniProtKB/TrEMBL
      A0A8J8XNM9, G7N6C7, H9FYF6, I0FU69
      Related
      ENSMMUP00000074989.1, ENSMMUT00000097039.1
      Conserved Domains (3) summary
      smart00648
      Location:209 → 262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35 → 155
      DRY_EERY; Alternative splicing regulator
      NF033838
      Location:633 → 773
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    3. XM_015109713.2 → XP_014965199.1  splicing factor, suppressor of white-apricot homolog isoform X2

      UniProtKB/TrEMBL
      H9FYF6
      Related
      ENSMMUP00000062925.1, ENSMMUT00000101595.1
      Conserved Domains (3) summary
      PRK12495
      Location:504 → 618
      PRK12495; hypothetical protein; Provisional
      smart00648
      Location:209 → 262
      SWAP; Suppressor-of-White-APricot splicing regulator
      pfam09750
      Location:35 → 155
      DRY_EERY; Alternative splicing regulator

    4. XM_015109714.2 → XP_014965200.1  splicing factor, suppressor of white-apricot homolog isoform X3

      UniProtKB/TrEMBL
      H9FYF6
      Conserved Domains (2) summary
      smart00648
      Location:83 → 136
      SWAP; Suppressor-of-White-APricot splicing regulator
      NF033838
      Location:507 → 647
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    5. XM_028830176.1 → XP_028686009.1  splicing factor, suppressor of white-apricot homolog isoform X3

      UniProtKB/TrEMBL
      H9FYF6
      Conserved Domains (2) summary
      smart00648
      Location:83 → 136
      SWAP; Suppressor-of-White-APricot splicing regulator
      NF033838
      Location:507 → 647
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form

    6. XM_015109715.2 → XP_014965201.1  splicing factor, suppressor of white-apricot homolog isoform X3

      UniProtKB/TrEMBL
      H9FYF6
      Conserved Domains (2) summary
      smart00648
      Location:83 → 136
      SWAP; Suppressor-of-White-APricot splicing regulator
      NF033838
      Location:507 → 647
      PspC_subgroup_1; pneumococcal surface protein PspC, choline-binding form
    Nucleotide Protein
    Heading Accession and Version

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