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    ATG5 autophagy related 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696874, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATG5provided by VGNC
    Official Full Name
    autophagy related 5provided by VGNC
    Primary source
    VGNC:VGNC:70165
    Locus tag
    EGK_15205
    See related
    Ensembl:ENSMMUG00000019679
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATG5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (66883461..67018846)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (103821448..103994012)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677534 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene PR/SET domain 1 Neighboring gene uncharacterized LOC114677390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in C-terminal protein lipidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to nitrogen starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg12-Atg5-Atg16 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy protein 5
    Names
    ATG5 autophagy related 5 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      66883461..67018846
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001088300.3 → XP_001088300.1  autophagy protein 5 isoform X1

      See identical proteins and their annotated locations for XP_001088300.1

      UniProtKB/TrEMBL
      A0A5F7ZYF8, A0A8J8XDF0, F7CH17, G7MQ04
      Related
      ENSMMUP00000070664.1, ENSMMUT00000080113.1
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 270
      APG5; Autophagy protein Apg5

    2. XM_015137017.2 → XP_014992503.1  autophagy protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QJY3, F7GH37
      Related
      ENSMMUP00000074063.1, ENSMMUT00000104187.1
      Conserved Domains (1) summary
      pfam04106
      Location:1 → 192
      APG5; Autophagy protein Apg5

    3. XM_015137018.2 → XP_014992504.1  autophagy protein 5 isoform X3

      Related
      ENSMMUP00000025859.4, ENSMMUT00000027646.4
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 189
      APG5; Autophagy protein Apg5

    4. XM_028847306.1 → XP_028703139.1  autophagy protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZYF8, A0A8J8XDF0, F7CH17, G7MQ04
      Related
      ENSMMUP00000025856.4, ENSMMUT00000027643.4
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 270
      APG5; Autophagy protein Apg5

    5. XM_028847307.1 → XP_028703140.1  autophagy protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZYF8, A0A8J8XDF0, F7CH17, G7MQ04
      Conserved Domains (1) summary
      pfam04106
      Location:79 → 270
      APG5; Autophagy protein Apg5

    6. XM_028847308.1 → XP_028703141.1  autophagy protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QJY3, F7GH37
      Related
      ENSMMUP00000033312.3, ENSMMUT00000040246.3
      Conserved Domains (1) summary
      pfam04106
      Location:1 → 192
      APG5; Autophagy protein Apg5
    Nucleotide Protein
    Heading Accession and Version

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