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    LRRC40 leucine rich repeat containing 40 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702565, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LRRC40provided by VGNC
    Official Full Name
    leucine rich repeat containing 40provided by VGNC
    Primary source
    VGNC:VGNC:81434
    See related
    Ensembl:ENSMMUG00000021921
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LRRC40 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (154243591..154307431)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (69902742..69966576, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672098 Neighboring gene ANKRD13C divergent transcript Neighboring gene ankyrin repeat domain 13C Neighboring gene serine and arginine rich splicing factor 11 Neighboring gene leucine rich repeat containing 7 Neighboring gene peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 pseudogene Neighboring gene uncharacterized LOC114678234

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261023.1 → NP_001247952.1  leucine-rich repeat-containing protein 40

      See identical proteins and their annotated locations for NP_001247952.1

      Status: PROVISIONAL

      Source sequence(s)
      JU471575
      UniProtKB/TrEMBL
      F6T4T3, H9YXG3
      Related
      ENSMMUP00000070327.1, ENSMMUT00000104471.1
      Conserved Domains (3) summary
      cd00116
      Location:98 → 324
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:107 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:151 → 209
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      154243591..154307431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142264.2 → XP_014997750.1  leucine-rich repeat-containing protein 40 isoform X1

      UniProtKB/TrEMBL
      F6T4T3
      Conserved Domains (4) summary
      cd00116
      Location:98 → 324
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:336 → 349
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:107 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:151 → 209
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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