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    KDSR 3-ketodihydrosphingosine reductase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700476, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KDSRprovided by VGNC
    Official Full Name
    3-ketodihydrosphingosine reductaseprovided by VGNC
    Primary source
    VGNC:VGNC:73954
    See related
    Ensembl:ENSMMUG00000006578
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See KDSR in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (16743558..16785238)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (52902337..52942399, complement)

    Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial pseudogene Neighboring gene serpin family B member 5 Neighboring gene 26S proteasome regulatory subunit 8 pseudogene Neighboring gene vacuolar protein sorting 4 homolog B Neighboring gene BCL2 apoptosis regulator Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC114673747

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-dehydrosphinganine reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 3-keto-sphinganine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingolipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-ketodihydrosphingosine reductase
    NP_001244872.1
    XP_028693546.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257943.1 → NP_001244872.1  3-ketodihydrosphingosine reductase precursor

      See identical proteins and their annotated locations for NP_001244872.1

      Status: PROVISIONAL

      Source sequence(s)
      JU333775
      UniProtKB/TrEMBL
      A0A1D5Q761, A0A1D5QW12, F7HPT5
      Related
      ENSMMUP00000008653.4, ENSMMUT00000009209.4
      Conserved Domains (1) summary
      cd08939
      Location:32 → 268
      KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041771.1 Reference Mmul_10 Primary Assembly

      Range
      16743558..16785238
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028837713.1 → XP_028693546.1  3-ketodihydrosphingosine reductase isoform X1

      UniProtKB/TrEMBL
      A0A1D5QW12, A0A5F7ZYG5
      Related
      ENSMMUP00000069692.1, ENSMMUT00000090194.1
      Conserved Domains (1) summary
      cd08939
      Location:32 → 240
      KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
    Nucleotide Protein
    Heading Accession and Version

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