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    HP1BP3 heterochromatin protein 1 binding protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706362, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HP1BP3provided by VGNC
    Official Full Name
    heterochromatin protein 1 binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:73440
    See related
    Ensembl:ENSMMUG00000008852
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HP1BP3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (203923286..203970520)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (19552315..19598978, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial-like Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene U7 small nuclear RNA Neighboring gene SH2 domain containing 5 Neighboring gene uncharacterized LOC114673957 Neighboring gene kinesin family member 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heterochromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterochromatin protein 1-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257929.1 → NP_001244858.1  heterochromatin protein 1-binding protein 3

      See identical proteins and their annotated locations for NP_001244858.1

      Status: PROVISIONAL

      Source sequence(s)
      JU321949
      UniProtKB/TrEMBL
      F7FSW1, F7FSX0, H9Z9H5
      Related
      ENSMMUP00000069363.1, ENSMMUT00000090547.1
      Conserved Domains (4) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      PRK14900
      Location:455 → 531
      valS; valyl-tRNA synthetase; Provisional
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      203923286..203970520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843165.1 → XP_028698998.1  heterochromatin protein 1-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      F7FSX8, H9Z9H5
      Related
      ENSMMUP00000040544.3, ENSMMUT00000047509.3
      Conserved Domains (4) summary
      PRK13808
      Location:416 → 515
      PRK13808; adenylate kinase; Provisional
      smart00526
      Location:215 → 281
      H15; Domain in histone families 1 and 5
      cd00073
      Location:117 → 207
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:308 → 371
      Linker_histone; linker histone H1 and H5 family

    2. XM_028843160.1 → XP_028698993.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      F7FSW1, F7FSX0, H9Z9H5
      Related
      ENSMMUP00000076338.1, ENSMMUT00000093451.1
      Conserved Domains (4) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      PRK14900
      Location:455 → 531
      valS; valyl-tRNA synthetase; Provisional
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    3. XM_015129131.2 → XP_014984617.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      F7FSW1, F7FSX0, H9Z9H5
      Related
      ENSMMUP00000040546.1, ENSMMUT00000047511.3
      Conserved Domains (4) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      PRK14900
      Location:455 → 531
      valS; valyl-tRNA synthetase; Provisional
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family

    4. XM_015129099.2 → XP_014984585.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      F7FSW1, F7FSX0, H9Z9H5
      Related
      ENSMMUP00000040545.3, ENSMMUT00000047510.3
      Conserved Domains (4) summary
      smart00526
      Location:253 → 319
      H15; Domain in histone families 1 and 5
      PRK14900
      Location:455 → 531
      valS; valyl-tRNA synthetase; Provisional
      cd00073
      Location:155 → 245
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:346 → 411
      Linker_histone; linker histone H1 and H5 family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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