U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COL4A5 collagen type IV alpha 5 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703814, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    COL4A5
    Gene description
    collagen type IV alpha 5 chain
    See related
    Ensembl:ENSMMUG00000007235
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COL4A5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    54
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (105207083..105478498)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (102582388..102745527)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene collagen type IV alpha 6 chain Neighboring gene U6 spliceosomal RNA Neighboring gene insulin receptor substrate 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha-5(IV) chain

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      105207083..105478498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015128002.2 → XP_014983488.2  collagen alpha-5(IV) chain isoform X1

      UniProtKB/TrEMBL
      A0A1D5R3X6
      Related
      ENSMMUP00000055012.2, ENSMMUT00000077769.2
      Conserved Domains (2) summary
      pfam01391
      Location:1291 → 1350
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1579 → 1688
      C4; C-terminal tandem repeated domain in type 4 procollagen

    2. XM_028841868.1 → XP_028697701.1  collagen alpha-5(IV) chain isoform X3

      UniProtKB/TrEMBL
      A0A1D5QYY3
      Related
      ENSMMUP00000053265.2, ENSMMUT00000053835.2
      Conserved Domains (2) summary
      pfam01391
      Location:1285 → 1344
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1573 → 1682
      C4; C-terminal tandem repeated domain in type 4 procollagen

    3. XM_028841869.1 → XP_028697702.1  collagen alpha-5(IV) chain isoform X4

      Conserved Domains (3) summary
      pfam01391
      Location:1291 → 1350
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1468 → 1574
      C4; C-terminal tandem repeated domain in type 4 procollagen
      cl02467
      Location:1579 → 1607
      C4; C-terminal tandem repeated domain in type 4 procollagen

    4. XM_015128005.2 → XP_014983491.2  collagen alpha-5(IV) chain isoform X2

      UniProtKB/TrEMBL
      A0A1D5QHT1
      Related
      ENSMMUP00000047603.2, ENSMMUT00000057180.2
      Conserved Domains (2) summary
      pfam01391
      Location:1288 → 1347
      Collagen; Collagen triple helix repeat (20 copies)
      pfam01413
      Location:1576 → 1685
      C4; C-terminal tandem repeated domain in type 4 procollagen
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.