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    HDLBP high density lipoprotein binding protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700945, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HDLBPprovided by VGNC
    Official Full Name
    high density lipoprotein binding proteinprovided by VGNC
    Primary source
    VGNC:VGNC:73361
    See related
    Ensembl:ENSMMUG00000004730
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    vigilin
    Orthologs
    human mouse all
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    Genomic context

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    See HDLBP in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (128652019..128740989, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (124082265..124172584, complement)

    Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 7 Neighboring gene uncharacterized LOC114671464 Neighboring gene anoctamin 7 Neighboring gene uncharacterized LOC114671465 Neighboring gene septin 2 Neighboring gene FERM, ARH/RhoGEF and pleckstrin domain protein 2 Neighboring gene BTB/POZ domain-containing protein KCTD5 pseudogene Neighboring gene 40S ribosomal protein S12 pseudogene Neighboring gene serine/threonine kinase 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vigilin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041765.1 Reference Mmul_10 Primary Assembly

      Range
      128652019..128740989 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015111546.2 → XP_014967032.2  vigilin

      UniProtKB/TrEMBL
      A0A1D5QB27, H9FTN7, H9YUA5
      Related
      ENSMMUP00000045245.2, ENSMMUT00000058751.2
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    2. XM_015111549.2 → XP_014967035.2  vigilin

      UniProtKB/TrEMBL
      A0A1D5QB27, H9FTN7, H9YUA5
      Related
      ENSMMUP00000075432.1, ENSMMUT00000095866.1
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    3. XM_015111548.2 → XP_014967034.2  vigilin

      UniProtKB/TrEMBL
      A0A1D5QB27, H9FTN7, H9YUA5
      Related
      ENSMMUP00000061858.1, ENSMMUT00000085529.1
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    4. XM_028831355.1 → XP_028687188.1  vigilin

      UniProtKB/TrEMBL
      A0A1D5QB27, H9FTN7, H9YUA5
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins

    5. XM_028831356.1 → XP_028687189.1  vigilin

      UniProtKB/TrEMBL
      A0A1D5QB27, H9FTN7, H9YUA5
      Related
      ENSMMUP00000006291.4, ENSMMUT00000006686.4
      Conserved Domains (15) summary
      cd02394
      Location:435 → 502
      KH-I_Vigilin_rpt6; sixth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22405
      Location:77 → 144
      KH-I_Vigilin_rpt1; first type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22406
      Location:147 → 221
      KH-I_Vigilin_rpt2; second type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22407
      Location:224 → 283
      KH-I_Vigilin_rpt3; third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22408
      Location:297 → 358
      KH-I_Vigilin_rpt4; fourth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22409
      Location:364 → 433
      KH-I_Vigilin_rpt5; fifth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22410
      Location:507 → 573
      KH-I_Vigilin_rpt7; seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22411
      Location:583 → 644
      KH-I_Vigilin_rpt8; eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22412
      Location:653 → 722
      KH-I_Vigilin_rpt9; ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22413
      Location:726 → 791
      KH-I_Vigilin_rpt10; tenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22414
      Location:802 → 867
      KH-I_Vigilin_rpt11; eleventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22415
      Location:875 → 970
      KH-I_Vigilin_rpt12; twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22416
      Location:972 → 1049
      KH-I_Vigilin_rpt13; thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22417
      Location:1053 → 1126
      KH-I_Vigilin_rpt14; fourteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
      cd22418
      Location:1128 → 1196
      KH-I_Vigilin_rpt15; fifteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
    Nucleotide Protein
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