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    TNFSF13B TNF superfamily member 13b [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693917, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TNFSF13Bprovided by VGNC
    Official Full Name
    TNF superfamily member 13bprovided by VGNC
    Primary source
    VGNC:VGNC:78594
    Locus tag
    EGK_09455
    See related
    Ensembl:ENSMMUG00000008040
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    TNLG7A
    Orthologs
    human mouse all
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    Genomic context

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    See TNFSF13B in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (89805960..89845887)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (89995622..90035227)

    Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene NALCN channel auxiliary factor 1 Neighboring gene uncharacterized LOC114673472 Neighboring gene abhydrolase domain containing 13 Neighboring gene DNA ligase 4 Neighboring gene myosin XVI Neighboring gene uncharacterized LOC106994389

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomic analysis of eutherian tumor necrosis factor ligand genes. Premzl M. Immunogenetics, 2016 Feb. PMID 26646413
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables receptor ligand activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor ligand superfamily member 13B
    Names
    TNF- and APOL-related leukocyte expressed ligand 1
    tumor necrosis factor (ligand) superfamily, member 13b
    tumor necrosis factor ligand 7A
    tumor necrosis factor superfamily member 13b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041770.1 Reference Mmul_10 Primary Assembly

      Range
      89805960..89845887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001082119.4 → XP_001082119.1  tumor necrosis factor ligand superfamily member 13B isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZII6
      Related
      ENSMMUP00000064452.1, ENSMMUT00000085939.1
      Conserved Domains (1) summary
      cd00184
      Location:135 → 263
      TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

    2. XM_001082247.4 → XP_001082247.1  tumor necrosis factor ligand superfamily member 13B isoform X1

      See identical proteins and their annotated locations for XP_001082247.1

      UniProtKB/TrEMBL
      A0A8J8XB87, F7H548, F7HHH0, G7NJL7
      Related
      ENSMMUP00000036043.3, ENSMMUT00000043029.3
      Conserved Domains (1) summary
      cd00184
      Location:146 → 282
      TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
    Nucleotide Protein
    Heading Accession and Version

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