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    LOC719262 transcription factor Spi-B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719262, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC719262
    Gene description
    transcription factor Spi-B
    Locus tag
    EGK_10926
    See related
    Ensembl:ENSMMUG00000056332
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SPIB; POLD1
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    Genomic context

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    See LOC719262 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (50291028..50336314)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (45747890..45793764)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674080 Neighboring gene napsin-A Neighboring gene nuclear receptor subfamily 1 group H member 2 Neighboring gene myosin binding protein C2 Neighboring gene golgi associated RAB2 interactor 5A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-DNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication proofreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in base-excision repair, gap-filling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair, DNA gap filling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of delta DNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA polymerase delta catalytic subunit; transcription factor Spi-B
    Names
    polymerase (DNA directed), delta 1, catalytic subunit 125kDa
    XP_014980136.1
    XP_014980138.1
    XP_014980139.1
    XP_028695278.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      50291028..50336314
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028839445.1 → XP_028695278.1  DNA polymerase delta catalytic subunit isoform X2

      UniProtKB/TrEMBL
      F6ZNP5
      Conserved Domains (2) summary
      smart00413
      Location:1286 → 1374
      ETS; erythroblast transformation specific domain
      PTZ00166
      Location:115 → 1132
      PTZ00166; DNA polymerase delta catalytic subunit; Provisional

    2. XM_015124650.2 → XP_014980136.1  transcription factor Spi-B isoform X1

      UniProtKB/TrEMBL
      A0A5F8AMC5, A0A8J8YFI3, G7NLR6
      Related
      ENSMMUP00000078977.1, ENSMMUT00000102625.1
      Conserved Domains (1) summary
      smart00413
      Location:168 → 256
      ETS; erythroblast transformation specific domain

    3. XM_015124652.1 → XP_014980138.1  transcription factor Spi-B isoform X3

      Conserved Domains (1) summary
      smart00413
      Location:137 → 225
      ETS; erythroblast transformation specific domain

    4. XM_015124653.1 → XP_014980139.1  transcription factor Spi-B isoform X4

      UniProtKB/TrEMBL
      F7F0F3
      Conserved Domains (1) summary
      pfam00178
      Location:79 → 160
      Ets; Ets-domain
    Nucleotide Protein
    Heading Accession and Version

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