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    USP47 ubiquitin specific peptidase 47 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701660, updated on 17-Aug-2024

    Summary

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    Official Symbol
    USP47provided by VGNC
    Official Full Name
    ubiquitin specific peptidase 47provided by VGNC
    Primary source
    VGNC:VGNC:79230
    See related
    Ensembl:ENSMMUG00000022860
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See USP47 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (53665238..53782196, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (54463285..54579955, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2 Neighboring gene uncharacterized LOC114672320 Neighboring gene dickkopf WNT signaling pathway inhibitor 3 Neighboring gene uncharacterized LOC114672335 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene uncharacterized LOC114672336

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 47
    XP_001098399.2
    XP_014970341.1
    XP_014970342.1
    XP_014970344.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      53665238..53782196 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001098399.4 → XP_001098399.2  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZB18, F6XVW7
      Related
      ENSMMUP00000061814.1, ENSMMUT00000094194.1
      Conserved Domains (1) summary
      cd02659
      Location:98 → 478
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    2. XM_015114856.2 → XP_014970342.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZM37, F6XVW7
      Related
      ENSMMUP00000066692.1, ENSMMUT00000107012.1
      Conserved Domains (1) summary
      cd02659
      Location:166 → 546
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    3. XM_015114855.2 → XP_014970341.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

      UniProtKB/TrEMBL
      F6WNB6, F6XVW7
      Related
      ENSMMUP00000030105.3, ENSMMUT00000032179.4
      Conserved Domains (1) summary
      cd02659
      Location:186 → 566
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

    4. XM_015114858.2 → XP_014970344.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X4

      UniProtKB/TrEMBL
      F6XVW7, F6XVX6
      Related
      ENSMMUP00000036970.3, ENSMMUT00000024546.4
      Conserved Domains (2) summary
      cd02659
      Location:86 → 466
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      NF033609
      Location:728 → 925
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
    Nucleotide Protein
    Heading Accession and Version

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