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    NPAS1 neuronal PAS domain protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716963, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NPAS1provided by VGNC
    Official Full Name
    neuronal PAS domain protein 1provided by VGNC
    Primary source
    VGNC:VGNC:75377
    See related
    Ensembl:ENSMMUG00000011330
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NPAS1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (47032491..47056362)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (42385543..42409528)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit sigma 1 Neighboring gene Rho GTPase activating protein 35 Neighboring gene transmembrane protein 160 Neighboring gene zinc finger CCCH-type containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuronal PAS domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      47032491..47056362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001112801.3 → XP_001112801.1  neuronal PAS domain-containing protein 1 isoform X4

      See identical proteins and their annotated locations for XP_001112801.1

      UniProtKB/TrEMBL
      F6VP46, G7NN19
      Related
      ENSMMUP00000019485.4, ENSMMUT00000020823.4
      Conserved Domains (3) summary
      smart00091
      Location:141 → 198
      PAS; PAS domain
      pfam08447
      Location:316 → 387
      PAS_3; PAS fold
      cd19731
      Location:43 → 116
      bHLH-PAS_NPAS1_PASD5; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 1 (NPAS1) and similar proteins

    2. XM_015124326.2 → XP_014979812.1  neuronal PAS domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      G7NN19
      Conserved Domains (3) summary
      smart00091
      Location:141 → 198
      PAS; PAS domain
      pfam08447
      Location:328 → 399
      PAS_3; PAS fold
      cd19731
      Location:43 → 116
      bHLH-PAS_NPAS1_PASD5; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 1 (NPAS1) and similar proteins

    3. XM_028839339.1 → XP_028695172.1  neuronal PAS domain-containing protein 1 isoform X5

      Conserved Domains (3) summary
      PRK12495
      Location:331 → 454
      PRK12495; hypothetical protein; Provisional
      smart00091
      Location:141 → 198
      PAS; PAS domain
      cd19731
      Location:43 → 116
      bHLH-PAS_NPAS1_PASD5; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 1 (NPAS1) and similar proteins

    4. XM_015124328.2 → XP_014979814.1  neuronal PAS domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      G7NN19
      Conserved Domains (3) summary
      smart00091
      Location:141 → 198
      PAS; PAS domain
      pfam08447
      Location:327 → 398
      PAS_3; PAS fold
      cd19731
      Location:43 → 116
      bHLH-PAS_NPAS1_PASD5; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 1 (NPAS1) and similar proteins

    5. XM_015124329.2 → XP_014979815.1  neuronal PAS domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      G7NN19
      Conserved Domains (3) summary
      smart00091
      Location:141 → 198
      PAS; PAS domain
      pfam08447
      Location:317 → 388
      PAS_3; PAS fold
      cd19731
      Location:43 → 116
      bHLH-PAS_NPAS1_PASD5; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in neuronal PAS domain-containing protein 1 (NPAS1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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