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    TLCD1 TLC domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710391, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TLCD1provided by VGNC
    Official Full Name
    TLC domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:104665
    Locus tag
    EGK_08337
    See related
    Ensembl:ENSMMUG00000051743
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TLCD1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (24353615..24358295, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (22745676..22748813, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD42 Neighboring gene ribosomal protein L23a Neighboring gene small nucleolar RNA Z17 Neighboring gene small nucleolar RNA SNORD42 Neighboring gene small nucleolar RNA Z17 Neighboring gene NIMA related kinase 8 Neighboring gene TNF receptor associated factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in membrane assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plasma membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of membrane lipid distribution IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TLC domain-containing protein 1; calfacilitin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194451.2 → NP_001181380.1  TLC domain-containing protein 1

      See identical proteins and their annotated locations for NP_001181380.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000157
      UniProtKB/TrEMBL
      A0A5F8A5Y4, A0A8J8YQ19, F6S372, H9F4Q4
      Related
      ENSMMUP00000072350.1, ENSMMUT00000087685.1
      Conserved Domains (1) summary
      smart00724
      Location:41 → 234
      TLC; TRAM, LAG1 and CLN8 homology domains

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      24353615..24358295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015118851.2 → XP_014974337.1  calfacilitin isoform X1

      UniProtKB/TrEMBL
      H9F4Q4
      Conserved Domains (1) summary
      smart00724
      Location:20 → 187
      TLC; TRAM, LAG1 and CLN8 homology domains
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials