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    KDM4A lysine demethylase 4A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701272, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KDM4Aprovided by VGNC
    Official Full Name
    lysine demethylase 4Aprovided by VGNC
    Primary source
    VGNC:VGNC:99987
    See related
    Ensembl:ENSMMUG00000012479
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    JMJD2A
    Orthologs
    human mouse all
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    Genomic context

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    See KDM4A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (180755709..180813557, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (43142505..43199810)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3 Neighboring gene serine hydroxymethyltransferase, cytosolic pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene protein tyrosine phosphatase receptor type F Neighboring gene SZT2 subunit of KICSTOR complex Neighboring gene hydroxypyruvate isomerase (putative)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K36 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 4A
    Names
    jumonji domain containing 2A
    XP_028690478.1
    XP_028690480.1
    XP_028690486.1
    XP_028690494.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      180755709..180813557 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028834645.1 → XP_028690478.1  lysine-specific demethylase 4A isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZYY3, A0A8J8YB68, F7FB62, G7MGL6
      Related
      ENSMMUP00000016387.4, ENSMMUT00000017497.4
      Conserved Domains (5) summary
      smart00545
      Location:13 → 55
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:954 → 1009
      TUDOR; Tudor domain
      cd15575
      Location:666 → 765
      PHD_JMJD2A; PHD finger found in Jumonji domain-containing protein 2A (JMJD2A)
      cd15713
      Location:774 → 883
      ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
      pfam02373
      Location:175 → 291
      JmjC; JmjC domain, hydroxylase

    2. XM_028834647.1 → XP_028690480.1  lysine-specific demethylase 4A isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZYY3, A0A8J8YB68, F7FB62, G7MGL6
      Related
      ENSMMUP00000069863.1, ENSMMUT00000107791.1
      Conserved Domains (5) summary
      smart00545
      Location:13 → 55
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:954 → 1009
      TUDOR; Tudor domain
      cd15575
      Location:666 → 765
      PHD_JMJD2A; PHD finger found in Jumonji domain-containing protein 2A (JMJD2A)
      cd15713
      Location:774 → 883
      ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
      pfam02373
      Location:175 → 291
      JmjC; JmjC domain, hydroxylase

    3. XM_028834653.1 → XP_028690486.1  lysine-specific demethylase 4A isoform X2

      Conserved Domains (4) summary
      smart00333
      Location:863 → 918
      TUDOR; Tudor domain
      cd15575
      Location:575 → 674
      PHD_JMJD2A; PHD finger found in Jumonji domain-containing protein 2A (JMJD2A)
      cd15713
      Location:683 → 792
      ePHD_JMJD2A; Extended PHD finger (ePHD) found in Jumonji domain-containing protein 2A (JMJD2A)
      pfam02373
      Location:84 → 200
      JmjC; JmjC domain, hydroxylase

    4. XM_028834661.1 → XP_028690494.1  lysine-specific demethylase 4A isoform X3

      Conserved Domains (2) summary
      smart00545
      Location:13 → 55
      JmjN; Small domain found in the jumonji family of transcription factors
      cl21464
      Location:175 → 212
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein
    Heading Accession and Version

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