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    SFPQ splicing factor proline and glutamine rich [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712439, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SFPQprovided by VGNC
    Official Full Name
    splicing factor proline and glutamine richprovided by VGNC
    Primary source
    VGNC:VGNC:77184
    See related
    Ensembl:ENSMMUG00000019154
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SFPQ in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (189446338..189463106)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (34325695..34342488, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene zinc finger MYM-type containing 4 Neighboring gene 60S ribosomal protein L5 pseudogene Neighboring gene 60S ribosomal protein L7a pseudogene Neighboring gene NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa pseudogene Neighboring gene zinc finger MYM-type containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor, proline- and glutamine-rich

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      189446338..189463106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015135017.2 → XP_014990503.2  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      F6SSM0, I2CXH1
      Conserved Domains (4) summary
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      pfam17380
      Location:498 → 609
      DUF5401; Family of unknown function (DUF5401)

    2. XM_015135070.2 → XP_014990556.2  splicing factor, proline- and glutamine-rich isoform X2

      UniProtKB/TrEMBL
      A0A5F8AUI1
      Conserved Domains (4) summary
      PRK12704
      Location:486 → 594
      PRK12704; phosphodiesterase; Provisional
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)

    3. XM_015135027.2 → XP_014990513.2  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      F6SSM0, I2CXH1
      Related
      ENSMMUP00000025177.4, ENSMMUT00000026910.4
      Conserved Domains (4) summary
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      pfam17380
      Location:498 → 609
      DUF5401; Family of unknown function (DUF5401)

    4. XM_015135043.2 → XP_014990529.2  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      F6SSM0, I2CXH1
      Conserved Domains (4) summary
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      pfam17380
      Location:498 → 609
      DUF5401; Family of unknown function (DUF5401)

    5. XM_015135047.2 → XP_014990533.2  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      F6SSM0, I2CXH1
      Conserved Domains (4) summary
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      pfam17380
      Location:498 → 609
      DUF5401; Family of unknown function (DUF5401)

    6. XM_015135037.2 → XP_014990523.2  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      F6SSM0, I2CXH1
      Conserved Domains (4) summary
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      pfam17380
      Location:498 → 609
      DUF5401; Family of unknown function (DUF5401)

    7. XM_015135054.2 → XP_014990540.2  splicing factor, proline- and glutamine-rich isoform X1

      UniProtKB/TrEMBL
      F6SSM0, I2CXH1
      Conserved Domains (4) summary
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
      pfam17380
      Location:498 → 609
      DUF5401; Family of unknown function (DUF5401)

    8. XM_015135062.2 → XP_014990548.2  splicing factor, proline- and glutamine-rich isoform X2

      UniProtKB/TrEMBL
      A0A5F8AUI1
      Related
      ENSMMUP00000081129.1, ENSMMUT00000093295.1
      Conserved Domains (4) summary
      PRK12704
      Location:486 → 594
      PRK12704; phosphodiesterase; Provisional
      cd12948
      Location:442 → 538
      NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
      cd12333
      Location:372 → 451
      RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
      cd12587
      Location:296 → 366
      RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)
    Nucleotide Protein
    Heading Accession and Version

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