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    PRDM15 PR/SET domain 15 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 722504, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRDM15provided by VGNC
    Official Full Name
    PR/SET domain 15provided by VGNC
    Primary source
    VGNC:VGNC:108429
    See related
    Ensembl:ENSMMUG00000018046
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRDM15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (4802079..4877651)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (4880111..4905163)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene zinc finger and BTB domain containing 21 Neighboring gene C2 calcium dependent domain containing 2 Neighboring gene uncharacterized LOC106997235 Neighboring gene receptor interacting serine/threonine kinase 4 Neighboring gene uncharacterized LOC106997234

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PR domain zinc finger protein 15
    Names
    PR domain containing 15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      4802079..4877651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845313.1 → XP_028701146.1  PR domain zinc finger protein 15 isoform X1

      UniProtKB/TrEMBL
      F7FJB5
      Related
      ENSMMUP00000035665.3, ENSMMUT00000042657.3
      Conserved Domains (6) summary
      smart00317
      Location:86 → 202
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG0810
      Location:264 → 347
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      COG5048
      Location:713 → 882
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:749 → 769
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:685 → 706
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:409 → 431
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_015132844.2 → XP_014988330.2  PR domain zinc finger protein 15 isoform X2

      UniProtKB/TrEMBL
      F7FJB5
      Conserved Domains (5) summary
      smart00317
      Location:86 → 202
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG0810
      Location:264 → 347
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      COG5048
      Location:400 → 862
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:729 → 749
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:665 → 686
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_028845314.1 → XP_028701147.1  PR domain zinc finger protein 15 isoform X3

      UniProtKB/TrEMBL
      F7FJB5
      Related
      ENSMMUP00000035666.3, ENSMMUT00000042658.3
      Conserved Domains (5) summary
      COG0810
      Location:111 → 194
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      COG5048
      Location:560 → 729
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:596 → 616
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:532 → 553
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:256 → 278
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

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