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    THSD4 thrombospondin type 1 domain containing 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700919, updated on 17-Aug-2024

    Summary

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    Official Symbol
    THSD4provided by VGNC
    Official Full Name
    thrombospondin type 1 domain containing 4provided by VGNC
    Primary source
    VGNC:VGNC:99269
    See related
    Ensembl:ENSMMUG00000006118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See THSD4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (47834856..48512759)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (48411876..48786866)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999229 Neighboring gene cancer/testis associated 62 Neighboring gene uncharacterized LOC114679446 Neighboring gene nuclear receptor subfamily 2 group E member 3 Neighboring gene myosin IXA Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thrombospondin type-1 domain-containing protein 4
    Names
    thrombospondin type-1 domain-containing protein 4-like
    thrombospondin, type I, domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      47834856..48512759
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028851087.1 → XP_028706920.1  thrombospondin type-1 domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      F7B0D8
      Related
      ENSMMUP00000008041.3, ENSMMUT00000008554.4
      Conserved Domains (3) summary
      smart00209
      Location:735 → 792
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:411 → 527
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam08686
      Location:974 → 1004
      PLAC; PLAC (protease and lacunin) domain

    2. XM_001089233.4 → XP_001089233.2  thrombospondin type-1 domain-containing protein 4 isoform X2

      See identical proteins and their annotated locations for XP_001089233.2

      UniProtKB/TrEMBL
      F7B086
      Conserved Domains (3) summary
      smart00209
      Location:376 → 433
      TSP1; Thrombospondin type 1 repeats
      pfam05986
      Location:52 → 168
      ADAM_spacer1; ADAM-TS Spacer 1
      pfam08686
      Location:615 → 645
      PLAC; PLAC (protease and lacunin) domain
    Nucleotide Protein
    Heading Accession and Version

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