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    HAPLN1 hyaluronan and proteoglycan link protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712501, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HAPLN1provided by VGNC
    Official Full Name
    hyaluronan and proteoglycan link protein 1provided by VGNC
    Primary source
    VGNC:VGNC:73220
    See related
    Ensembl:ENSMMUG00000061282
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HAPLN1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (80429407..80514257, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (80456719..80541186, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 167A Neighboring gene X-ray repair cross complementing 4 Neighboring gene uncharacterized LOC114678838 Neighboring gene versican Neighboring gene U6 spliceosomal RNA Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC114678840

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hyaluronic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hyaluronan and proteoglycan link protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      80429407..80514257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001112414.3 → XP_001112414.2  hyaluronan and proteoglycan link protein 1

      UniProtKB/TrEMBL
      A0A5F7ZBB0, A0A8J8YDT3, G7MV77
      Related
      ENSMMUP00000066998.1, ENSMMUT00000107905.1
      Conserved Domains (3) summary
      cd03518
      Location:159 → 253
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd03519
      Location:260 → 350
      Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd05877
      Location:43 → 161
      Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP), and similar domains

    2. XM_015140360.2 → XP_014995846.2  hyaluronan and proteoglycan link protein 1

      UniProtKB/TrEMBL
      A0A5F7ZBB0, A0A8J8YDT3, G7MV77
      Related
      ENSMMUP00000062884.1, ENSMMUT00000109844.1
      Conserved Domains (3) summary
      cd03518
      Location:159 → 253
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd03519
      Location:260 → 350
      Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd05877
      Location:43 → 161
      Ig_LP_like; Immunoglobulin (Ig)-like domain of human cartilage link protein (LP), and similar domains
    Nucleotide Protein
    Heading Accession and Version

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