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    PRPF18 pre-mRNA processing factor 18 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696401, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRPF18provided by VGNC
    Official Full Name
    pre-mRNA processing factor 18provided by VGNC
    Primary source
    VGNC:VGNC:106092
    Locus tag
    EGK_19466
    See related
    Ensembl:ENSMMUG00000015071
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRPF18 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (14723372..14767988)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (13653774..13698617)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene BEN domain containing 7 Neighboring gene uncharacterized LOC107000051 Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene uncharacterized LOC107000049 Neighboring gene FERM domain containing 4A Neighboring gene uncharacterized LOC114669898

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in generation of catalytic spliceosome for second transesterification step IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type post-spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor 18
    Names
    PRP18 pre-mRNA processing factor 18 homolog
    PRP18-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260784.1 → NP_001247713.1  pre-mRNA-splicing factor 18

      See identical proteins and their annotated locations for NP_001247713.1

      Status: PROVISIONAL

      Source sequence(s)
      JV048539
      UniProtKB/TrEMBL
      A0A1D5Q8N9, A0A8J8XE66, F6WVX3, G7N1M0
      Related
      ENSMMUP00000019751.2, ENSMMUT00000021124.4
      Conserved Domains (2) summary
      smart00500
      Location:79 → 122
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      pfam02840
      Location:191 → 327
      Prp18; Prp18 domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      14723372..14767988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015146470.2 → XP_015001956.1  pre-mRNA-splicing factor 18 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q8N9, F6WVW4
      Related
      ENSMMUP00000019753.3, ENSMMUT00000021126.4
      Conserved Domains (2) summary
      smart00500
      Location:88 → 131
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      pfam02840
      Location:200 → 336
      Prp18; Prp18 domain
    Nucleotide Protein
    Heading Accession and Version

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