U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SKIC2 SKI2 subunit of superkiller complex [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715987, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SKIC2provided by VGNC
    Official Full Name
    SKI2 subunit of superkiller complexprovided by VGNC
    Primary source
    VGNC:VGNC:77375
    See related
    Ensembl:ENSMMUG00000000736
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SKIV2L
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SKIC2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (137526622..137537213, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (32845853..32856742)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene complement C4-A Neighboring gene serine/threonine kinase 19 Neighboring gene decapping exoribonuclease Neighboring gene negative elongation factor complex member E Neighboring gene complement factor B Neighboring gene complement C2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ski complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    helicase SKI2W
    Names
    Ski2 like RNA helicase
    superkiller viralicidic activity 2-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      137526622..137537213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015136027.2 → XP_014991513.2  helicase SKI2W isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q9D5, G7MRL6, H9EUX5, I0FGQ9
      Related
      ENSMMUP00000044653.2, ENSMMUT00000077911.2
      Conserved Domains (1) summary
      COG4581
      Location:291 → 1244
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]

    2. XM_015136028.2 → XP_014991514.2  helicase SKI2W isoform X2

      UniProtKB/TrEMBL
      F6YDJ2, I0FGQ9
      Related
      ENSMMUP00000000996.4, ENSMMUT00000001063.4
      Conserved Domains (2) summary
      COG4581
      Location:207 → 1160
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
      pfam17911
      Location:5 → 122
      Ski2_N; Ski2 N-terminal region

    3. XM_028847710.1 → XP_028703543.1  helicase SKI2W isoform X3

      UniProtKB/TrEMBL
      G7MRL6, H9EUX5, I0FGQ9
      Conserved Domains (3) summary
      COG4581
      Location:291 → 881
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
      pfam13234
      Location:763 → 1023
      rRNA_proc-arch; rRNA-processing arch domain
      pfam17911
      Location:79 → 206
      Ski2_N; Ski2 N-terminal region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.