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    Vmn2r90 vomeronasal 2, receptor 90 [ Mus musculus (house mouse) ]

    Gene ID: 626942, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Vmn2r90provided by MGI
    Official Full Name
    vomeronasal 2, receptor 90provided by MGI
    Primary source
    MGI:MGI:3645076
    See related
    Ensembl:ENSMUSG00000092120 AllianceGenome:MGI:3645076
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG626942
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Vmn2r90 in Genome Data Viewer
    Location:
    17 A3.2; 17 10.14 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (17924203..17954429)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (17703941..17734167)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene leucyl/cystinyl aminopeptidase Neighboring gene STARR-positive B cell enhancer ABC_E5575 Neighboring gene STARR-positive B cell enhancer ABC_E7491 Neighboring gene STARR-seq mESC enhancer starr_41962 Neighboring gene STARR-positive B cell enhancer ABC_E4194 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:17762259-17762524 Neighboring gene STARR-positive B cell enhancer ABC_E7492 Neighboring gene farnesyl diphosphate synthetase pseudogene Neighboring gene STARR-seq mESC enhancer starr_41964 Neighboring gene STARR-seq mESC enhancer starr_41965 Neighboring gene STARR-seq mESC enhancer starr_41966 Neighboring gene microRNA let7e Neighboring gene sperm acrosome associated 6 Neighboring gene microRNA 99b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal receptor Vmn2r90

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104539.1 → NP_001098009.1  vomeronasal receptor Vmn2r90 precursor

      Status: INFERRED

      Source sequence(s)
      AC121822
      Consensus CDS
      CCDS49966.1
      UniProtKB/TrEMBL
      E9PXJ8
      Related
      ENSMUSP00000126650.2, ENSMUST00000169805.3
      Conserved Domains (4) summary
      cd06365
      Location:36 → 506
      PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam00003
      Location:601 → 835
      7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
      pfam01094
      Location:77 → 470
      ANF_receptor; Receptor family ligand binding region
      pfam07562
      Location:515 → 566
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      17924203..17954429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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