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    Ccdc43 coiled-coil domain containing 43 [ Mus musculus (house mouse) ]

    Gene ID: 52715, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc43provided by MGI
    Official Full Name
    coiled-coil domain containing 43provided by MGI
    Primary source
    MGI:MGI:1289318
    See related
    Ensembl:ENSMUSG00000020925 AllianceGenome:MGI:1289318
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D11Ertd707e; 2610001E01Rik
    Summary
    Predicted to be located in cytosol. Is expressed in brain; liver; and neural retina. Orthologous to human CCDC43 (coiled-coil domain containing 43). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 8.6), CNS E18 (RPKM 5.1) and 23 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc43 in Genome Data Viewer
    Location:
    11 E1; 11 66.48 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102575510..102595829, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102684684..102697948, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene proteasome (prosome, macropain) subunit, beta type 5, pseudogene Neighboring gene STARR-seq mESC enhancer starr_30817 Neighboring gene meiosis specific with coiled-coil domain Neighboring gene STARR-seq mESC enhancer starr_30819 Neighboring gene DBF4 zinc finger B Neighboring gene proteasome (prosome, macropain) subunit, alpha type 1 pseudogene Neighboring gene a disintegrin and metallopeptidase domain 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cytosol  
    located_in cytosol  

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 43

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025918.3NP_080194.1  coiled-coil domain-containing protein 43

      See identical proteins and their annotated locations for NP_080194.1

      Status: VALIDATED

      Source sequence(s)
      AL672269
      Consensus CDS
      CCDS25502.1
      UniProtKB/Swiss-Prot
      Q6PDT2, Q9CR29
      Related
      ENSMUSP00000090230.7, ENSMUST00000092569.13

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      102575510..102595829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533720.5XP_006533783.1  coiled-coil domain-containing protein 43 isoform X1

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